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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCCCCAGATATTTCTAAATGGGAAACACTAATCTGGCTTTCGGTTATGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGCGCTATGGAGgtgggggatgatattcacattttcctttttcacttattttcttttatgaaaagtgaagtagcagtcatctgtttgagatttatttatttatttttcttca...

Basic information

species Glycine max
transcript GLYMA18G08030.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 7
TGAATCCCCAGATATTTCTAAATGGGAAACACTAATCTGGCTTTCGGTTATGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGCGCTATGGAGgtgggggatgatat-tcacattttcctttttcacttattttcttttatgaaaagtgaagtagcagtcatctgtttgagatttatttatttatttttcttca
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TGAAGGTCCAGAGATCTCTAAATGGGAATCAGTAATTTGGCTTTCGATCTTAACTGCTTGGATAGCAATCCTATCAGAATATCTTGTTGATGCAATAGAGgtaattctttttgcctcccaacaatttcatttccttcattgattatatgcataaagacattgaataaaagtgggcgcaaccgtggaatagaggaaggata-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334704|gb|CO978570.1|CO978570
EST:     TGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGCGCTATGGAG                         GGAGCATCTATGGCATGGGAAATTCCAGTAGCATTTATTAGTGTCATATTG
genomic: TGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGCGCTATGGAGgtgggggatg ... tttgttacagGGAGCATCTATGGCATGGGAAATTCCAGTAGCATTTATTAGTGTCATATTG