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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTGTTTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatttgtgacttgtattattgaatatcatatttttctagaatgtctcttttaaattgttgatcttttgtacatgtgta

Basic information

species Glycine max
transcript GLYMA18G03360.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209702245|gb|BW664636.1|BW664636
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|207776492|gb|GD747405.1|GD747405
EST:     ATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: ATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|193510568|gb|FK468074.1|FK468074
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|209700576|gb|BW670404.1|BW670404
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|151409423|gb|EV279231.1|EV279231
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|208298675|gb|GE089816.1|GE089816
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|208198358|gb|GD995463.1|GD995463
EST:     TGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|208075033|gb|GD875530.1|GD875530
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|208278052|gb|GE073939.1|GE073939
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGGTCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATA
EST: gi|193690072|gb|FK631849.1|FK631849
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|208221059|gb|GE020729.1|GE020729
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|208173433|gb|GD971188.1|GD971188
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|213596106|gb|DB975869.1|DB975869
EST:     CTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCA-AACG
genomic: CTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTA-G
EST: gi|208311173|gb|GE102977.1|GE102977
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATA
EST: gi|193401209|gb|FK370152.1|FK370152
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|208202192|gb|GD998319.1|GD998319
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAA-TGATA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATA
EST: gi|208083366|gb|GD883960.1|GD883960
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|214006383|gb|DB985759.1|DB985759
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
EST: gi|193406522|gb|FK371827.1|FK371827
EST:     TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCA                         GTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA
genomic: TTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatt ... tacatgtgtaGTGAAAACAAATGATATGATGCTGGTAATATACCTCTCATCTCTCATTAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGTGTTTAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAggttaagatttgtgacttgtattattgaatatcatatttttctagaatgtctcttttaaattgttgatcttttgtacatgtgta

- - - - - - - - - - - - - - - -  GCTGAT