1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAACACATGTGAGGATTCCCTTTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgcattgctaaatgattttattgcttgattgtattcgtcattgtatttttttcagccttctgaggtcactatgttgtggtggttgatgcag
species | Glycine max |
transcript | GLYMA18G02210.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|193523759|gb|FK477864.1|FK477864
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|207774146|gb|GD743268.1|GD743268
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTTAGCTATCTGACCEST: gi|192304598|gb|FG994918.1|FG994918
genomic: TCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|208322814|gb|GE123905.1|GE123905
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|208304649|gb|GE106074.1|GE106074
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAACACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|17021583|gb|BM092617.1|BM092617
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|120491712|gb|EH219879.1|EH219879
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|9900642|gb|BE609610.1|BE609610
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|193529719|gb|FK483986.1|FK483986
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|7327134|gb|AW620996.1|AW620996
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|193431271|gb|FK394637.1|FK394637
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCACTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|208231045|gb|GE033444.1|GE033444
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|208287344|gb|GE085708.1|GE085708
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCAEST: gi|6200949|gb|AW153049.1|AW153049
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCA
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|193430848|gb|FK393682.1|FK393682
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|12774084|gb|BG239011.1|BG239011
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTTCACTCATTCAACCAAGTTGCTACCATTCTTAGCTATCTGACCEST: gi|16996086|gb|BM085458.1|BM085458
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|213592630|gb|DB979421.1|DB979421
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|5753617|gb|AI960904.1|AI960904
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|6070479|gb|AW099866.1|AW099866
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|6725970|gb|AW310369.1|AW310369
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|207779965|gb|GD753986.1|GD753986
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCTTGCTGAGCTGAGCACTAGTAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTACCACTCATTCCACCCAGTTGCTACCATTCTTAGCTATCTGACEST: gi|193557316|gb|FK514387.1|FK514387
genomic: TCTTGCTGAGCTGAGCACTAG-AATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATT-CCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGAC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCGGTTTAAAGCTGAAAGTGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|208110981|gb|GD908741.1|GD908741
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|208338689|gb|GE134867.1|GE134867
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|208315496|gb|GE116190.1|GE116190
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: GCTGAAAATGAG GGTAAAATTCCTACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGAEST: gi|208298017|gb|GE092364.1|GE092364
genomic: GCTGAAAATGAGgtctgcatgc ... gttgatgcagGG-AAAATTCC-ACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGA
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|16342506|gb|BI968101.1|BI968101
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|209697827|gb|BW670083.1|BW670083
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|120530085|gb|EH258219.1|EH258219
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|4299061|gb|AI442850.1|AI442850
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|120491684|gb|EH219851.1|EH219851
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|58017143|gb|CX703885.1|CX703885
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|19937572|gb|BQ081344.1|BQ081344
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|207703735|gb|GD686299.1|GD686299
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|120491615|gb|EH219782.1|EH219782
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|18724004|gb|BM523521.1|BM523521
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTANAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCEST: gi|298179536|gb|HO028007.1|HO028007
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACACATGTGAGGATTCCCTTTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgcattgctaaatgattttattgcttgattgtattcgtcattgtatttttttcagccttctgaggtcactatgttgtggtggttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA