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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCAAAGTCGGACAAAAATTCTAgtaagtagcttcccaggctcccgcatgacaaatctgtcacataaatgatgtcgttacctgatacaaaacaacagttggtaattatgtttctttacatgtatttttcctttcag

Basic information

species Glycine max
transcript GLYMA18G00920.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312177|gb|FK005662.1|FK005662
EST:     GCCTCAAAGTCGGACAAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
EST: gi|254326113|gb|GR840705.1|GR840705
EST:     GCCTCAAAGTCGGACAAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
EST: gi|192324353|gb|FK015704.1|FK015704
EST:     GGCCTCAAAGTCGGACAAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GGCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
EST: gi|208241879|gb|GE041073.1|GE041073
EST:     GCCTCAAAGTCGGACAAAAATTCTA                         AGCAAAAGATGCCTG
genomic: GCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTG
EST: gi|31458741|gb|CD400769.1|CD400769
EST:     GCCTCAAAGTCGGACTAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
EST: gi|58022050|gb|CX708791.1|CX708791
EST:     GCCTCAAAGTCGGACAAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
EST: gi|14008855|gb|BG725459.1|BG725459
EST:     GTCGGACAAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
EST: gi|4289526|gb|AI441488.1|AI441488
EST:     GCCTCAAAGTCGGACAAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
EST: gi|192312176|gb|FK005661.1|FK005661
EST:     GCCTCAAAGTCGGACAAAAATTCTA                         AGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA
genomic: GCCTCAAAGTCGGACAAAAATTCTAgtaagtagct ... ttcctttcagAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAA