Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttaaaatgtaatacttagagtctgattttaactaaatattaagtatgcttctgtgactcagcaagaacagttgcgttcatgcag

Basic information

species Glycine max
transcript GLYMA17G37150.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 7
CAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttaaaatgtaatacttagagtctgatt-ttaactaaatattaagtatgcttctgt--gactcagcaaga-acagttgcgttcatgcag-----------------
| ||||||| || ||| | ||||||| ||||||||||  |||||| || ||||||||||| |||||||||||||| ||| | ||  |  | ||  |||||||    |||||      | |||||     ||| ||| ||   ||  | |    ||| ||  |||   ||  | | | | |   ||  | | |||                    
CCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGgtggagtgcttgtgtcttcatactccacatcttattgttcgttatgtttctgttatactgatgttaaacctaactatacaggattcagctaatgatttctcagtgttcatgcag

upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 5'ss of exon 8
CAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttaaaatgtaatacttagagtctgattttaacta--aatattaagtatgcttctgtgactcagcaagaacagttgcgttcatgcag
| ||||||| || ||||| ||||| | |||||| |||  ||||| ||||||||||||||| ||||||||||| || ||| | || ||  | || ||||||||       |  |  |     |     | | || ||  ||  |  || |  |   |   |  ||| ||| | |    |   |  |   | || ||
CCAGCTGCCAGATTTTCTTGGTGGCACTTGCACCTGTGCAGATCGAGGTGGTTGTATGAGATCTGATAAAGGCCCCTGGAATGACCCTGAGATATTAAAGgtaaa--aatcgatcttccgcagcct-attttggttaaaaagattaacaccagacagaatagtgttacttaact--gatcttccccaccttgtag

upper sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 8
CAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgcttaaaatgtaatacttagagtctgatt---ttaactaaat-attaagt-atgcttct-gtgactcagcaagaacagttgcgttcatgcag------------------------------------------
  || |||| |||||||| |||||||| || |  |||  |||||| || |||||| ||| ||||||||| ||||| ||| | ||||||||||| |||||||| || |  | |   || ||   ||| |   |||||   ||    || | || |||| |  ||||| |    ||  | |   || |||  |  |    |                                          
TGAGTTGCCCGAATTTCTCGGTGGTAGCTGTATCTGTGCAGATCAGGGAGGTTGTTTGAAGTCTGATAAGGGGCCGTGGAAAGATCCAAACATATTAAAGgtctggttgtcatcttgaaactattaaatattgattcagttgtgcaattgatcaagtcactcttctagcctatcttctaatgcacttgtttggaaattgtactttgtaaatgttttgaatgacatgattgtctgcgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208173024|gb|GD967555.1|GD967555
EST:     CAGGATCCAAACATTTTAAAG                         ATGGTTCTTAGCGGCGAAGTGCAATGTTCTAGACAAATAGTAACAGTTACT
genomic: CAGGATCCAAACATTTTAAAGgtttgctgct ... gttcatgcagATGGTTCTTAGCGGCGAAGTGCAATGTTCTAGACAAATAGTAACAGTTACT