Sequence
atgc intronic sequence ATGC exonic sequenceCTACTTTTTAGGAAAGTAGCCTCTGTCAACTTGGAAAACCTCAACCATCAGGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATGtatgtcagttatgtccattacaacaacatttagtataatctgtatctaaacattttttccacgcaatttattataactttcctcaataatcagaataacaaatcttaatttgtgcgcctaattatcctgtcaaaccataataatgatggtattttaagttctactttgcttcagg
Basic information
species | Glycine max |
transcript | GLYMA17G36350.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G36350.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os09g28850.2 (Oryza sativa), 5'ss of exon 5
CTACTTT--TTAGGAAAGTAGCCTCTGTCAACTTGGAAAACCTCAACCATCAGGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATGtatgtcagttatgtccattacaacaacatttagtataatctgtatctaaacattttttccacgcaatttattataactttcctcaataatcagaataacaaatcttaatttgtgcgcctaattatcctgtcaaaccataataatgatggtattttaagttctactttgcttcagg
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-GGCTTTGATCCGGAGGCTTTCATCGGTTGACCTGACGGGGCTCTCCCATCAGCAGAAGCTGGCATTCTGGATCAACATCTACAATTCGTGCATGATGAATgtaagct-gtca-gcctgtcact-cataattgagcccaccc---atcctga-atttcttcatcttgatcaattatatctttgttcattttctcgttagagggaaatt---------------------------------------------------------------------
upper sequence: GLYMA17G36350.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G066516_T01 (Zea mays), 5'ss of exon 5
CTACTTTTTAGGAAAGTAGCC-TCTGTCAACTTGGAAAACCTCAACCATCAGGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATGtatgtcagttatgtccattacaacaacatttagtataatctgtatctaaacattttttccacgcaatttattataactttcctcaataatcagaataacaaatcttaatttgtgcgcctaattatcctgtcaaaccataataatgatggtattttaagttctactttgcttcagg
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GGCCTTGCTGCGGAGGCTGTCGTCGGTTGACCTGGCGGGGCTCTCCCATCAGCAGAAGCTGGCCTTCTGGATCAACGTCTACAATTCCTGCATGATGAACgtaagccatcgggcagtcacatttcagagttgggtgtttcctcttcttgtgtgtttttttttaaaagaagaagacagcaaaattcgcaattcggtttgct----------------------------------------------------------------------------
upper sequence: GLYMA17G36350.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g11120.t01 (Vitis vinifera), 5'ss of exon 8
-CTACTTTTTAGGAAAGTAGCCTCTGTCAACTTGGAAAACCTCAACCATCAGGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATGtatgtcagttatgtccattacaacaacatttagtataatctgtatctaaacattttttccacgcaatttattataactttcctcaataatcagaataacaaatcttaatttgtgcgcctaattatcctgtcaaaccataataatgatggtattttaagttctactttgcttcagg
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GCGCCTCCTCGGGAAACTTGCCTCTGTTAACTTACAGGGCCTAACCCATCAGGAGAAGCTTGCTTTCTGGATCAACACCTATAATTCCTGCATGATGAATgtaagcaaggcctttttgtaaacgtaa-atttaa---actctatgttt--attcttttgcttatctgtttactgtactgcattgcttgctttag----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|41145434|gb|CK605645.1|CK605645EST: GGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATG CATTCATAGAGAATGGCATACCAGAGAATCCTCAAATGGCTGTTGCACTAA
genomic: GGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATGtatgtcagtt ... ttgcttcaggCATTCATAGAGAATGGCATACCAGAGAATCCTCAAATGGCTGTTGCACTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTACTTTTTAGGAAAGTAGCCTCTGTCAACTTGGAAAACCTCAACCATCAGGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATGtatgtcagttatgtccattacaacaacatttagtataatctgtatctaaacattttttccacgcaatttattataactttcctcaataatcagaataacaaatcttaatttgtgcgcctaattatcctgtcaaaccataataatgatggtattttaagttctactttgcttcagg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC