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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGgtttgccatgattttcatttcttcccttttactgttgataactatagtgtacatttccatcataaaccacgaaaatataaatgagttaagacctatcaag...

Basic information

species Glycine max
transcript GLYMA17G33690.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G33690.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
GAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGgtttgccatg--attttcatttcttcccttttactgttgataactatagtgtacatttccatcataaaccacgaaaat-------ata---aatgagttaagacctatcaag
|| |||||| |||| ||||| || |||||||||||  | ||||||||||| || |||||||| ||| |||||||||||||   |    |    |||||||       | |  |       || ||| | |||  || || || ||   | | |       |||   |||  || |  |  |||||  
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcaca-cacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098639|gb|HO760380.1|HO760380
EST:     AGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAG                         GAAGCTGTTGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAG
genomic: AGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGgtttgccatg ... ctttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGACGCAGAGGAGGCAGCAAAG
EST: gi|10845528|gb|BF071133.1|BF071133
EST:     AGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAG                         GAAGCTGTTGCTATGATTAAACCAATTGAGGACGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGgtttgccatg ... ctttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGACGCAGAGGAGGCAGCAAAG
EST: gi|151409117|gb|EV278925.1|EV278925
EST:     AGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAG                         GAAGCTGTTGCTATGATTAAACCAATTGAGGACGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGgtttgccatg ... ctttctccagGAAGCTGTTGCTATGATTAAACCAATTGAGGACGCAGAGGAGGCAGCAAAG