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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttctatttcaaataactggcctcctactgcattctataaatttgacaaaacacaatccttgagtaattttgttctttagattcatttttaatttt...

Basic information

species Glycine max
transcript GLYMA17G20610.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 5'ss of exon 8
AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgta------gtttctatttcaaataactggcctcctactgcattctataaatttgacaaaacacaatccttgagtaatttt-gttctttagattcatttttaatttt
||| |||| ||||| ||||||||||||||   |  ||||||||||||| | ||||||| |||||| || |||||||| ||||||  |||||| | || |||       | |  | | || || |||     |  |  ||||    ||||  ||   |   | |   |    |  |  ||  |   ||| ||| |  || ||     
AGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCGgttagtaatgctggtttctccaaaaacatagtttattttgcag---ataatcttatgattcctcttcctcccaacagcttgagaaatttggatgcccttctag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26046047|gb|CA783394.1|CA783394
EST:     CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: gi|18714643|gb|BM522792.1|BM522792
EST:     CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAAT
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAAT
EST: gi|15662107|gb|BI699478.1|BI699478
EST:     CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: gi|254320505|gb|GR826954.1|GR826954
EST:     CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: gi|10238046|gb|BE806934.1|BE806934
EST:     TTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: TTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: gi|20811762|gb|BQ296240.1|BQ296240
EST:     CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: gi|254342837|gb|GR858999.1|GR858999
EST:     CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: gi|120533008|gb|EH261141.1|EH261141
EST:     CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG                         AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC