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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTACTTGGGAAACTAGCCTCTCTGAACTTGAAGGGTCTTACTCATCAGGAAAAACTTGCATTCTGGATAAACACTTACAATTCCTGCATGATGAATgtaaaacacctttctgccattgatttactgcatctcattatgttagaacaattgttacaacacattacaatgcaacacttgaagggtcttaatatgctgtgagtcaacacattgaaagatttttggtttaaatgttgtag

Basic information

species Glycine max
transcript GLYMA17G20320.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20320.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os09g28850.2 (Oryza sativa), 5'ss of exon 5
GTTCCTACTTGGGAAACTAGCCTCTCTGAACTTGAAGGGTCTTACTCATCAGGAAAAACTTGCATTCTGGATAAACACTTACAATTCCTGCATGATGAATgtaaaacacctttctgccattgatttactgcatctcattatgttagaacaattgttacaacacattacaatgcaacacttgaagggtcttaatatgctgtgagtcaacacattgaaagatttttggtttaaatgttgtag
|    |  |  |||  ||  | ||  |  || ||| ||| ||  | |||||| | || || ||||||||||| ||||  |||||||| ||||||||||||||||     |   ||| || | ||  | ||   |     ||  |     ||||  | || |    |  | |  | |  |       |  |  |  |  |  | |                                    
GGCTTTGATCCGGAGGCTTTCATCGGTTGACCTGACGGGGCTCTCCCATCAGCAGAAGCTGGCATTCTGGATCAACATCTACAATTCGTGCATGATGAATgtaagctgtcagcctgtcactcata-attgagcccacccatcctg----aatttcttcatcttgatcaattatatctttgttcattttctcgttagagggaaatt-----------------------------------

upper sequence: GLYMA17G20320.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G37080.2 (Arabidopsis thaliana), 5'ss of exon 7
GTTCCTACTTGGGAAACTAGCCTCTCTGAACTTGAAGGGTCTTACTCATCAGGAAAAACTTGCATTCTGGATAAACACTTACAATTCCTGCATGATGAATgtaaaacacctttctgccattgatttactgcatctcattatgttagaacaattgttac-aacacattac-aatgcaacacttgaagggtcttaatatgctgtgagtcaacacattgaaagatttttggtttaaatgttgtag
|||||| |||   || ||  |   | | ||  |  | |||||||  || ||| | || ||||||||||||||||| ||||| ||||||||| | |||||||| | ||    || ||  |||     |||  || | ||   | ||||  | |   |   || || || |  |||      ||  |   |       |                                             
GTTCCTGCTTAATAAGCTTTCTGTTGTCAATCTAGACGGTCTTAGCCACCAGCAGAAGCTTGCATTCTGGATAAATACTTATAATTCCTGCGTTATGAATgtgagac----ttgtgtgatt-----acttgatatgatagagatagagaactgtctgtgaaaacgttgctgatgtcttgtttccaatttaccttcgtag-------------------------------------------

upper sequence: GLYMA17G20320.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 5
GTTCCTACTTGGGAAACTAGCCTCTCTGAACTTGAAGGGTCTTACTCATCAGGAAAAACTTGCATTCTGGATAAACACTTACAATTCCTGCATGATGAATgtaaaacacctttctgccat--tgatttactgcatctcattatgttagaacaattgttacaacacatt-acaatgcaacacttgaagggtcttaatatgctgtgagtcaacacattgaaagatttttggtttaaatgttgtag
| ||||||| ||||| || |||| | | |||||  |||||||||| |||||| | || || ||||| ||||||||||  ||||||||||||||||||||||||| | | ||  ||| |||  | || |     |  | |  |||  |||| |      ||||     | | | |      | | ||     |||  |   |                                          
GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCAGCAGAAGCTCGCATTTTGGATAAACATATACAATTCCTGCATGATGAATgtaagagatctcactgtcatcctcatgtttaaaaatttacaatgc-agaaaagaaaagacaattggctcatagtttcgagcataaataaatttatcaaaat------------------------------------------