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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAATCAAGCGTTGGGGAATCACGCCACAAATGCTGTAACCCATGATCAGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGgttcatacttcatacactttataatataatttattattatttttgcttgatggtttgttcattcctcttaagtttcctaatattattcttcttttttctttcctgcttactaatttaatttccattcag

Basic information

species Glycine max
transcript GLYMA17G18640.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561238|gb|CD487076.1|CD487076
EST:     AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGACACAAGCCTAAG                         CTGGTGAATATACTCCCCAAACCACGTAATAGAAGCAACAACAAGGACTCA
genomic: AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGgttcatactt ... ttccattcagCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
EST: gi|193303466|gb|FK271610.1|FK271610
EST:     AGTCTAATTGGCGTAAT-GGGGAAACAAGCCTAAG                         CTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
genomic: AGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGgttcatactt ... ttccattcagCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
EST: gi|16346744|gb|BI972339.1|BI972339
EST:     AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAG                         CTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
genomic: AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGgttcatactt ... ttccattcagCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
EST: gi|193597433|gb|FK550547.1|FK550547
EST:     TCTAATTGGCGTAATGGGGGAAGCAAGCCTAAG                         CTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
genomic: TCTAATTGGCGTAATGGGGGAAACAAGCCTAAGgttcatactt ... ttccattcagCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
EST: gi|31305874|gb|CD391077.1|CD391077
EST:     AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAG                         CTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
genomic: AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGgttcatactt ... ttccattcagCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
EST: gi|193422061|gb|FK386734.1|FK386734
EST:     AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAG                         CTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA
genomic: AGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGgttcatactt ... ttccattcagCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCA