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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCCACCACCATTACCTCCAAATTCTGGAGTAAGAAATTCAAGTGAAGCATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAGgtattaagagctgctagtcttcaaatgtgtttaaaagtatatacggagatatcatgtgttaacatgggtcatatcagaagttgtatatttcatgacacatatttcatcattctttttatgtctcagtaattagtgaaatttctttttatgcatatactcattgatgactaatgtactttaataaactcaaatgcccag

Basic information

species Glycine max
transcript GLYMA17G17990.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523246|gb|BU082057.1|BU082057
EST:     ATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAG                         GTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTT
genomic: ATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAGgtattaagag ... aaatgcccagGTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTT
EST: gi|192313935|gb|FK010327.1|FK010327
EST:     ATTAGAGCTATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAG                         GTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTT
genomic: ATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAGgtattaagag ... aaatgcccagGTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTT
EST: gi|192320132|gb|FK014188.1|FK014188
EST:     ATTAGAGCTATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAG                         GTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTT
genomic: ATTAGAGCCATCAGTTGCTCCATCTGTGTCACAGCATAATGCTCGGCCAGgtattaagag ... aaatgcccagGTGAACTCAAAATTGTGCAAATAACAATGGTAATTTCCTTTAACATCAGTT