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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaatccatgttccaacatgtcattgggacctaaccaattagtttatactgtaatttaacaattctccgttatcggttttaattatttcaatatatcggacatgcag

Basic information

species Glycine max
transcript GLYMA17G17790.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301710|gb|FG994404.1|FG994404
EST:     CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: gi|209710356|gb|BW681255.1|BW681255
EST:     AAATTTATCAATGCAGATAATCAACATCCTTGT-TACTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCT
genomic: AAATTTATCAATGCAGATAATCAACAT-CTTGTGT-CTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCT
EST: gi|16345458|gb|BI971053.1|BI971053
EST:     CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: gi|16283183|gb|BI945415.1|BI945415
EST:     CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGTTA
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: gi|151412099|gb|EV281911.1|EV281911
EST:     CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: gi|6667566|gb|AW279017.1|AW279017
EST:     CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGTTA
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: gi|209714912|gb|BW682077.1|BW682077
EST:     CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: gi|58018593|gb|CX705335.1|CX705335
EST:     CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: gi|26059174|gb|CA802088.1|CA802088
EST:     CAACATCTTGTGTCTCCTGAG                         GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
genomic: CAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaatccatgttccaacatgtcattgggacctaaccaattagtttatactgtaatttaacaattctccgttatcggttttaattatttcaatatatcggacatgcag

- - - - - - - - - - - - - - - - - GCAGAT