Sequence
atgc intronic sequence ATGC exonic sequenceCAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgagttctttcatactaatttgaataactcttatttttatttttctgttctgaatgtactttttcttttaccttatttgcatgcatcaatgtgttcatg...
Basic information
species | Glycine max |
transcript | GLYMA17G17010.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G17010.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G021573_T01 (Zea mays), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgag------ttctttcatactaattt--gaataactcttatttttatttttctgttctgaatgtactttttcttttaccttatttgcatgcatcaatgtgttcatg
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---GCACCACCAGCAAGGAAGATGGCAGTCTCGGATTGGAAGAGTCGCTGGAAACAAGGATCTATACCTCGGCACTTTCAgtaagaaaagatcgttccatttggctgcagaagtagcttttagcgctaatcctttggc---ggtgt-ctgttgtactaatgtcgattgtct-cgtcaaagtacaa---
upper sequence: GLYMA17G17010.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgagttctttcatactaatttgaataactcttatttttatttttctgttctgaatgtactttttcttttaccttatttgcatgcatcaatgtgttcatg
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---ACATCACCAGCATGGAAGGTGGCAAGCACGGATTGGTAGAGTCGCTGGAAACAAAGATCTCTACCTTGGAACTTTTGgtaa--ttcatcatgccgat---gattttgattgttaaaacttaacattttcaattgcttgtgtcttacgaaatcttttgacactatcatag--------
upper sequence: GLYMA17G17010.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgagttctttcatact---aatttgaataactcttatttttatttttctgttctgaatgtactttttctt-ttaccttatttgcatgcatcaatgtgttcatg
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---ACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCAgtgagttttttttttttctcaatctttagtttcctgggcaagaacctttcatgccattgttacgtattgtggttgtgttcttcactcatattcttaaatc----
upper sequence: GLYMA17G17010.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ26861 (Selaginella moellendorffii), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgagttctttcatactaatttgaataactcttatttttatttttctgttctgaatgtactttttcttttaccttatttgcatgcatcaatgtgttcatg
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---ACACCATCAACAAGGACGCTGGCAAGCCCGGATTGGAAGAGTAGCCGGCAACAAAGATCTTTACCTCGGAACTTTCAgtaagttctca---gttgtttagagcaa----tgcaatgcctcgctcggtctga-------tcttgtttaaaccaaccag--------------------
upper sequence: GLYMA17G17010.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ21317 (Selaginella moellendorffii), 5'ss of exon 7
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgagttctttcatactaatttgaataactcttatttttatttttctgttctgaatgtactttttcttttaccttatttgcatgcatcaatgtgttcatg
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---ACACCATCAACAAGGACGCTGGCAAGCCCGGATTGGAAGAGTAGCCGGCAACAAAGATCTTTACCTCGGAACTTTCAgtaagttctc----agttgtttaaagcaatgcaatgcctcgctc---ggtctga-------tcttgtttaaaccaaccag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193388426|gb|FK356629.1|FK356629EST: TCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCA GTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCC
genomic: TCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgagttctt ... taaactctagGTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAgtgagttctttcatactaatttgaataactcttatttttatttttctgttctgaatgtactttttcttttaccttatttgcatgcatcaatgtgttcatg
- - - - - - - - - - - - - - - - - - - - - - - GCTGGA