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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATTTGGAAAAATCACATCATCAACGTGTATCTGAGTTGCGACGGCTTCGCTCAATgtatgtgcttcttttctttaacattgttacattgcagattacttattttggtaaatcgtggattgatttaatatataccaagttgtactttgagaattgt...

Basic information

species Glycine max
transcript GLYMA17G15510.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G48520.1 (Arabidopsis thaliana), 5'ss of exon 8
CAGATTTGGAAAAATCACATCATCAACGTGTATCTGAGTTGCGACGGCTTCGCTCAATgtatgtgcttctt--ttctttaacattgttacattgcagattacttattttggtaa--atcgtggattgatttaatatataccaagttgtactttgagaattgt----
   |||||||||| ||||| |||||||||||| ||||  | | ||||||||| || ||||||||  |   |  | ||    || | | || || ||| ||  | | ||||      |   ||||||    |||  | |   | ||||       | ||||||    
---ATTTGGAAAAGTCACAGCATCAACGTGTAGCTGAACTCCAACGGCTTCGGTCCATgtatgtattatgtggtactccggcaatataac-tttcagctt--tcactttgaccgttactctggatttggataaagtctttta-gttgag----aaaaattgtactc

upper sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0333g00070.t01 (Vitis vinifera), 5'ss of exon 5
CAGATTTGGAAAAATCACATCATCAACGTGTATCTGAGTTGCGACGGCTTCGCTCAATgtatgtgcttcttttcttt-aacattgttacattgcagattacttattttggtaaatcgtggattgatttaatatataccaagttgtactttgagaattgt
   |||| || ||||| |||||||||||||||||||| ||||  ||||||||||| |||||||   |  | | |||| |   || | | | | |    | | | | |    | |   |  ||||||| | |   |   |          ||   |||  
---ATTTAGAGAAATCCCATCATCAACGTGTATCTGAATTGCAGCGGCTTCGCTCTATgtatggattcttctgcttttagtgttctaaaagtacctggttcctttatgaaaagacactctattgattgattggttggtataactggtaatggatatta-