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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCCGCCTTGCTGCTATTGACTACATTGTTTGTGATGAAAGTAATGTATTTGTTACTAACAATAATGGTAACATGGCCAAAATCCTTGCCGGTCGAAGgtaataatgaatgcatggtgtcatccttttattcttcctttatgtttaaaaaatttatacgattaatgtgtttggcatctactataaacctgctgattgtacaaaacag

Basic information

species Glycine max
transcript GLYMA17G15170.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15170.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 8
CTTCCCGCCTTGCTGCTATTGACTACATTGTTTGTGATGAAAGTAATGTATTTGTTACTAACAATAATGGTAACATGGCCAAAATCCTTGCCGGTCGAAGgtaataatgaatgcatggtgtcatccttttattcttcctttatgtttaaaaaatttatacgattaatgtgtttggcatctactataaacctgctgattgtacaaaacag
||||  |  | ||||| ||||| | ||| || ||||| |  ||| |||| |||||||| ||||||||||| |||||||||||  |  | || || ||||||||   ||  || | |    |     |  ||    | ||  ||||  |  | | ||  | | | ||    |  | | ||   ||| |  |     |    |        
CTTCAAGATTGGCTGCAATTGATTTCATCGTATGTGACGGGAGTGATGTTTTTGTTACAAACAATAATGGAAACATGGCCAAGGTTTTAGCTGGACGAAGgtatgcatctat-cttctaatggatttgctaaatgttctaaatgtaaagtatagttgaatg-taaacagataagccttcaggtatgatgcaatccacctgat-------

upper sequence: GLYMA17G15170.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G101181_T01 (Zea mays), 5'ss of exon 8
CTTCCCGCCTTGCTGCTATTGACTACATTGTTTGTGATGAAAGTAATGTATTTGTTACTAACAATAATGGTAACATGGCCAAAATCCTTGCCGGTCGAAGgtaataatgaatgcatggtgtcatccttttattcttcctttatgtttaaaaaatttatacgattaatgtgtttggcatctactataaacctgctgattgtacaaaacag
|||| || || ||||| ||||||| ||||||||||||||| ||| |||| |||||||| || |||||||| |||||||||||| |  | || || || |||||    || |  | |  | |  ||    ||| |||    |||  | ||  |||   | |     |  |   |  || || |  || |    |  |  ||| |||  | 
CTTCACGGCTGGCTGCAATTGACTTCATTGTTTGTGATGAGAGTGATGTCTTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgta----tgtacccctctttt--tctgcatatgctttgggtattctaaactaatccctccatcccaaataaat--caactcccctagaatgacccagagta-aaattat

upper sequence: GLYMA17G15170.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G16650.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTCCCGCCTTGCTGCTATTGACTACATTGTTTGTGATGAAAGTAATGTATTTGTTACTAACAATAATGGTAACATGGCCAAAATCCTTGCCGGTCGAAGgtaataatgaatgcatggtgtcatccttttattcttcctttatgtttaaaaaatttatacgat-taatgtgtttggcatctactataaacctgctgattgtacaaaacag
|||| ||||||||||| ||||||||||||||| |||| |||||  |||| ||| | ||||| |||||||| || |||||||| || ||||| || |||||||||  ||   | |    ||||  | ||  |   || ||    ||| ||||   || | |  |   |       |||     |     | |  ||| |  |         
CTTCACGCCTTGCTGCCATTGACTACATTGTTAGTGACGAAAGCGATGTGTTTATCACTAATAATAATGGAAATATGGCCAAGATTCTTGCAGGCCGAAGgtaaggatattttccacttgtccccattaaagatttgct----gttaaaaactgttttccagtacgaaacaacaggcgatagcatcttatcatctgttactttg------