Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGgtaggagtgttctaataatatttagtaacaacagctttgtccttttaagcctgatatattatttcttgttaatttactaacccagcctgtcctttagttt...
Basic information
species | Glycine max |
transcript | GLYMA17G14820.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os08g05870.1 (Oryza sativa), 5'ss of exon 6
TTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGgtaggagtgttctaataatatttagtaacaacagctttgtccttttaagcctgatatattatttcttgt-taatttactaacccagcctgtcctttagttt----
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CTGCAGCCATCATGGAACCATGCACATAAAAGGGAATCGCCAGTATTCATGTAAACTCAAGTTCAAAGAGCCATCGCTTCTTGATCGCAATCCTCACCTGgtatgttttgtttcacctcctttttt-----ccttgtcatccttaactgtcatttttattactgttagcctgatatgtggagaaaaccatgttttctgtgtacag
upper sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 5'ss of exon 8
TTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGgtaggagtgttctaataatatttagtaaca-----acagctttgtccttttaagcctgatatattatttcttgttaatttact--aacccagcctgtcctttagttt----------------------------------------
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TTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattctactttggaacctctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgttcaaatttagtgtttttttaggattgtgaccagaatcgtttaaatggaacctactttctatgcag
upper sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 6
TTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGgtaggagtgttctaataatatttagtaaca-----acagctttgtccttttaagcctgatatattatttcttgttaatttact--aacccagcctgtcctttagttt----------------------------------------
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TTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCAAGTTCAAAGAGCAGGCTCTTCTTGACAGAAATCCTCACCAAgtaagcattctactttggaacctctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgttcaaatttagtgtttttttaggattgtgaccagaatcgtttaaatggaacctactttctatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6746936|gb|AW317392.1|AW317392EST: GCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAG GTGCATGGCTTTGTTGAAGATGTAACGGGAAAAAAGGTTGCCACATTATTT
genomic: GCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGgtaggagtgt ... gtctaattagGTGCATGGCTTTGTTGAAGATGTAACGGGAAAAAAGGTTGCCACATTATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGgtaggagtgttctaataatatttagtaacaacagctttgtccttttaagcctgatatattatttcttgttaatttactaacccagcctgtcctttagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccagcc