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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGAgtatgtagtcaatgctttgctcttttatcatagaaattaaaaaaaaaattgtaatcaatgttctataattgttcaaacaaatgatcgataaatcttctatatcgtgtaaatgtttctctag

Basic information

species Glycine max
transcript GLYMA17G14450.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G14450.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
TTTAGTGGAGCTATTTGGGGATGAGGAGAATAATCGTAAAGCTGTTGCATGTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGAgtatgtagtcaatgctttgctcttttatcatagaaattaaaaaaaaaattgtaatcaatgttctataattgttcaaacaaatgatcgataaatcttctatatcgtgtaaatgtttctctag
||||| ||| || ||||||||||||||||||  ||| | || || ||||||||| ||||||||||| || || ||||| ||| ||||||| |||||  | ||||||| |  | | ||| ||  ||  | ||  | |||  |  || |  | |     | |   ||    ||||| ||     |                                      
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagattt-ctaattgttgattcacattgtattaaga--tatttctgaagca-taagtgtgttcgaatttcag--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321302|gb|GR824619.1|GR824619
EST:     GTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGA                         GAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA
genomic: GTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGAgtatgtagtc ... gtttctctagGAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA
EST: gi|208131886|gb|GD932591.1|GD932591
EST:     GTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGA                         GAATTTCCTTTTGTCCGCTTTCGTTGCTGCCAAGTCCCTA
genomic: GTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGAgtatgtagtc ... gtttctctagGAATTTCCTTTTGTCCGCTTTCGT-GCTGCCAAGTCCCTA
EST: gi|193327628|gb|FK297345.1|FK297345
EST:     GTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGA                         GAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA
genomic: GTTTAAATGTGATGGCTACTCGGATTGCAACACTTTTTGCTTCATTAAGAgtatgtagtc ... gtttctctagGAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA