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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattttactaccagagtctcctgtaggttatatttaactgctacatattactgacatttattttttatag

Basic information

species Glycine max
transcript GLYMA17G14240.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G14240.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g04710.t01 (Vitis vinifera), 5'ss of exon 8
TTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattttactaccagagtctcctgtaggttatatttaactgctacatattactgacatttattttttatag---------------------
 || |||||||||||||| ||||||||||| || ||||||||  | ||| || ||| | || | || ||    ||| | ||||| ||| ||||  |||||||| || || | |   || | |       ||||| |||        | ||| |||      ||||        |                      
ATTCAGTTTCATTTTCACGTGGTTTGCTGCAGTGCCCCTCATATTTTGGCTATCTCAGACAATTACCAAATTTATTTTGAAAGATTTTTTGATCCTAAAGgtaaaatttctgca--cacatttattataaggttttatactgaaaatccatgttatatcagtttaaccgcccaactaataaaacattgttttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193499357|gb|FK462104.1|FK462104
EST:     TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAACACCT
genomic: TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... ttttttatagGGTCCTTGTCCGAACTGCGGTACTGAAAACACCT
EST: gi|9258401|gb|BE346548.1|BE346548
EST:     TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... ttttttatagGGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
EST: gi|16996417|gb|BM085789.1|BM085789
EST:     TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... ttttttatagGGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
EST: gi|6718461|gb|AW306108.1|AW306108
EST:     TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... ttttttatagGGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
EST: gi|9259613|gb|BE347760.1|BE347760
EST:     TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... ttttttatagGGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
EST: gi|192317109|gb|FK007862.1|FK007862
EST:     TAGCTCTGTCACTGACAAATGCTATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTGACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... ttttttatagGGTCCTTGTCCGAACTGCGGTACTGAAAACACCTCTTTCTTTGGGACTATA