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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag

Basic information

species Glycine max
transcript GLYMA17G13440.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 9
GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
||||||| ||||| || || |||||||| |||||||| || |||||  |||||||| |||||||||||||||  | |   |  |||  |   |    |   |||     || |     |||| |      | | ||  |||    ||   |||
GACTTGGATGGAGTTACCCCTGTGATATATGGAGTGTTGGTTGTATACTGGTTGAGCTATGCACGgtatgtt--gttgggtgcaatatttggtttgtattctatcacaacaacagcaggatttt------tgagttacgaaagc-taccgcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 8
-----------------------------------GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
                                   ||||||| ||||| || || |||||||| |||||||| || |||||  |||||||| |||||||||||||||  | |   |  |||  |   |    |   |||     || |     |||| |      | | ||  |||    ||   |||
ATGTTTACGATTGGAATGGCTGTTGTTCTGTTCAGGACTTGGATGGAGTTACCCCTGTGATATATGGAGTGTTGGTTGTATACTGGTTGAGCTATGCACGgtatgtt--gttgggtgcaatatttggtttgtattctatcacaacaacagcaggatttt------tgagttacgaaagc-taccgcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 8
GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
||||||| ||||| || |||||||||||||||||||| || |||||  | |||||| | |||||||||||||    |  ||    |    | |   |   | |  ||   |     |   ||     | |   | ||                
GACTTGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACGgtatgttattgtgccttgg-tttgattttgcatgtacaagtacagaggatctgagttac---caaggttctgcag-------------

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G063792_T01 (Zea mays), 5'ss of exon 4
-----------------------------------GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
                                   ||| ||| ||||| || |||||||||||||||||||| || |||||  | |||||| | |||||||||||||       |          | |   |   | |  || |      |  ||     || |  |  ||||| |            
TGGTGATATTTTATGATTGTGTGGATCTTGTTCAGGACATGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACGgtatgttaatgggaccttggcttcatttggcatgtacaagtaccaggggatctga----gttaccaaggttgtgcag-----------

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G063792_T06 (Zea mays), 5'ss of exon 7
GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
||| ||| ||||| || |||||||||||||||||||| || |||||  | |||||| | |||||||||||||       |          | |   |   | |  || |      |  ||     || |  |  ||||| |            
GACATGGATGGAGTTACCCATGTGATATCTGGAGTGTTGGTTGTATTCTTGTTGAGCTTTGCACGgtatgttaatgggaccttggcttcatttggcatgtacaagtaccaggggatctga----gttaccaaggttgtgcag-----------

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 8
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 8
GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagattctattccataatttgtgaatttatattacag
| ||||||||||| ||||| |||||| | ||||| || ||||||||| | || ||||| |||||||| ||      | ||| || |  |  ||    ||   || | |     ||||      ||||  |  |||||   |||| ||      
GTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACGgtgtg------tgtctgaagtagttgattgttaatgaatgtttgggagtctt-----ttattgaaagatttg-agatttgtag-----

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 9
GACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttggctctctcaaatcctgtataaaaaacatatttatccatctcttagatt--ctattccataatttgtgaatt-tatattacag--
| ||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||   |   | || | |  |  |       | ||| |       || || |    |    || ||     | || |  ||||||   
GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGGTGGAGTTATGCACGgtacgttta-ttaattaaattgcaatgcatgttgtctctttttgtcggcattggaatgatgaggttatgatgcaacatttattcattacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256128|gb|BQ453016.1|BQ453016
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|151400815|gb|EV270629.1|EV270629
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|193703915|gb|FK634803.1|FK634803
EST:     TGATATCTAGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: TGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|23728320|gb|BU762211.1|BU762211
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|13481209|gb|BG510552.1|BG510552
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|26058441|gb|CA801355.1|CA801355
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|208272783|gb|GE072267.1|GE072267
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|21602499|gb|BQ612830.1|BQ612830
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|19347043|gb|BM891931.1|BM891931
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|208339884|gb|GE139352.1|GE139352
EST:     TCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCAACG                         GGCGGAGCTTTGT
genomic: TCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCA-CGgtatgtttgg ... tatattacagGGCGGAGCTTTGT
EST: gi|151400202|gb|EV270016.1|EV270016
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|23728843|gb|BU762488.1|BU762488
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|18039009|gb|BM307303.1|BM307303
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|207847382|gb|GD820423.1|GD820423
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|10848324|gb|BF070835.1|BF070835
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|51334885|gb|CO978751.1|CO978751
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|208051460|gb|GD845927.1|GD845927
EST:     GGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: GGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
EST: gi|208261810|gb|GE059577.1|GE059577
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGT
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGT
EST: gi|208119861|gb|GD919740.1|GD919740
EST:     ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACG                         GGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG
genomic: ATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGgtatgtttgg ... tatattacagGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATG