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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGgtacttttcattcttctatttatcaatcaacatcccttttcaattgctccttatacgttgatgtactttgtcacatttattttatactgctaccag

Basic information

species Glycine max
transcript GLYMA17G13230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13230.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G65900.1 (Arabidopsis thaliana), 5'ss of exon 8
GACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGgtacttttcattcttctatttatcaatcaacatcccttttcaattgctccttatacgttgatgtactttgtcacatttattttatactgctaccag--------
||||||||||||||||||||||| |||||| | |||| ||||  || |          |||| | | |   |   | | |||   | |   | |    |   ||     ||||    ||| |  | || |||           
GACTGGATTGTGCAGTATGATCCTCCTGATAACCCAACGgtatgttgc----------ttataatttagggtttttatgcaaacacgcggaagaataagggataagaaatcactcaaattcttgaatgttacttttgatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14009258|gb|BG725862.1|BG725862
EST:     GACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAG                         GAATATATTCACAGGGTTGGTAGAACAGCTCGTGGTGAAGGTGGGAAAGGA
genomic: GACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGgtacttttca ... ctgctaccagGAATATATTCACAGGGTTGGTAGAACAGCTCGTGGTGAAGGTGGGAAAGGA