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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACACCAGGGGAGAATGTGTAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGgtatatgatattgaattgtgtgtttggccagcctttggaatattgtttttggagatctgaactgttttgcatttcag

Basic information

species Glycine max
transcript GLYMA17G13040.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13040.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g04160.t01 (Vitis vinifera), 5'ss of exon 8
TCAACACCAGGGGAGAATGTGTAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGgtatat---gatattgaattgtgtgtttggccagcctttggaatattgtttttggagatctga--------------actgttttgcatttcag
||| |||||||  ||||||||| | || |||||||| || |||||| |||||||||| ||| | |||| |||||| || |||||||||||||   |||||||| ||   | | |||  |||||    |||  | | ||||||  |||  ||  |||  ||| |               | ||||| ||||||||
TCAGCACCAGGATAGAATGTGTGGGCTGCAAGACATTGGTGGTCATATCATGAAAGTTCCATTAATTGGATTCCAAGTCCTTCTTTGTATGCGCTTAGAGgtacattttgtttttgggttgtgatcatggataccttttggataatttcttggggatgtcttatgaacagatttatagcggttttacatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346249|gb|BM891129.1|BM891129
EST:     CAGGTTCTTCTTTGTATGCATCTAGAG                         GGAACACCTGCTTGTGCTGTACATATACCTCTTCCAGTTATTTTCTCTCCC
genomic: CAGGTTCTTCTTTGTATGCATCTAGAGgtatatgata ... tgcatttcagGGAACACCTGCTTGTGCTGTACATATACCTCTTCCAGTTATTTTCTCTCCC
EST: gi|26047655|gb|CA784372.1|CA784372
EST:     TGAAAGTACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAG                         GGAACACCTGCTTGTGCTGTACATATACCTCTTCCAGTTATTTTCTCTCCC
genomic: TGAAAGTACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGgtatatgata ... tgcatttcagGGAACACCTGCTTGTGCTGTACATATACCTCTTCCAGTTATTTTCTCTCCC