Sequence
atgc intronic sequence ATGC exonic sequenceGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGgtaggatcactgtgtttagaagcttaggatttttggtctaggtctaaaactttaacaatagggcgagtcggccggctgctgtccagtttcccttgatata...
Basic information
species | Glycine max |
transcript | GLYMA17G09270.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGgtaggatca-ctgtgtt------tagaag--------cttaggatttttggtctaggtctaaaactttaa---caatagggcgagtcggccggctgctgtccagtttcccttgatata
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GGTGACAAGACCCAATCGGAAAGAGACCGAGTCTTGGCAGAATTTAAGAGTGGACGAAGCCCGATAATGACTGCCACTGATGTAGCAGCAAGGGGACTTGgtaggattaactgtgatacacaataggagagattatacttagagcatttcgtttt--cttggggttttaaagataataaaaaaagtcgcctggctgccgc----tttccacag-----
upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G63120.2 (Arabidopsis thaliana), 5'ss of exon 8
GGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGgtaggatca-ctgtgtt------tagaag--------cttaggatttttggtctaggtctaaaactttaa---caatagggcgagtcggccggctgctgtccagtttcccttgatata
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GGTGACAAGACCCAATCGGAAAGAGACCGAGTCTTGGCAGAATTTAAGAGTGGACGAAGCCCGATAATGACTGCCACTGATGTAGCAGCAAGGGGACTTGgtaggattaactgtgatacacaataggagagattatacttagagcatttcgtttt--cttggggttttaaagataataaaaaaagtcgcctggctgccgctt----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192314017|gb|FK011109.1|FK011109EST: TGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTG ATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCAACAAGCCTGG
genomic: TGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGgtaggatcac ... ttgcttgtagATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCAACAAGCCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGgtaggatcactgtgtttagaagcttaggatttttggtctaggtctaaaactttaacaatagggcgagtcggccggctgctgtccagtttcccttgatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC