Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGAAAATTATGCAGAGAAATACTATAACCTTCCAGAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttttcattatgttatactggtgttagcaaaaaaaaaaaacaaacaaaaagaaaacactgtgctttaatttacaacttaaaatcaaaattcaattcttctaagttctatgaaatgacaagttttaagacatgcctttggtttattggacag

Basic information

species Glycine max
transcript GLYMA17G08090.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08090.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 6
GTACTGAAAATTATGCAGAGAAATACTATAACCTTCCAGAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttttcattatgttatactggtgttagcaaaaaaaaaaaacaaacaaaaagaaaacac-tgtgctttaatttacaacttaaaatcaaaattcaattcttctaagttctatgaaatgacaagttttaagacatgcctttggtttattggacag
||||||| ||||||||||||||||||||||| |  || || |||||||| || ||||||||||||  |||    |||||||||||||||||||||||||||||    ||||||  || |||   || | ||    ||   |  | | |    | |    | ||  | || | |  || | ||   |   |         ||  || |  |||                                              
GTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGATGTGCAGAAGGCCATGCATGCAAATTCTACTGGAATTCCTTACAAATGGACTGCTTGCAGgttg---ttttcacaat-ttaatttgatctttttgaatttatcatatacgagagatcttagcagatatgatgtg-ttcataaaagagggtttgg---tgatctttttgtgttgggcag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562911|gb|BG551131.1|BG551131
EST:     GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAG                         TGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
genomic: GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttt ... tattggacagTGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
EST: gi|298169437|gb|HO020797.1|HO020797
EST:     GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAG                         TGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
genomic: GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttt ... tattggacagTGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
EST: gi|20813727|gb|BQ298205.1|BQ298205
EST:     GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAG                         TGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
genomic: GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttt ... tattggacagTGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
EST: gi|13562841|gb|BG551061.1|BG551061
EST:     GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAG                         TGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
genomic: GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttt ... tattggacagTGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
EST: gi|13482353|gb|BG511696.1|BG511696
EST:     GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAG                         TGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
genomic: GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttt ... tattggacagTGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
EST: gi|13563072|gb|BG551292.1|BG551292
EST:     GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAG                         TGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT
genomic: GCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttt ... tattggacagTGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCAT