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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaatagtcacttcatttccacatttattcttacagcttttggtgttttccattctaatggtaggatgttttggttctgtgattcaatttatcag

Basic information

species Glycine max
transcript GLYMA17G05530.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05530.4 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 7
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaatagtcacttcatttccacatttattcttacagcttttggtgttttccattctaatggtaggatgttttggttctgtgattcaatttatcag
 ||||| |||||||||||||||||||| || || || ||||| || ||||| |||||||||||  | |||||||||| |     |  |     || ||  |  ||||||  |     || |  | ||||    |    || |  |||   |    | ||| |||||  ||  |||
AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgta--gtgtcattgtgacagtttaatttttatttat-----ttgtacttttttttggtgcggtgct--gattgatcatctttgttattca--ttgacag

upper sequence: GLYMA17G05530.4 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G835213_T01 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgca-tgaaatagtcacttcatttccacatttattcttac----agcttttggtgttttccattctaatggtaggatgttttggttctgtgattcaatttatcag
 ||||| ||||| |||||||| ||||| ||||| || ||||| || ||||| |||||||||||  |||| ||||||| | ||      | | || |   |    |  ||| || |    | ||||||| | |     |||   | ||   ||||  |  |||  | |             
AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgccattatttaaaccctttgtgcattgttgccatgaacttttggagctgctgtttcatctcgtt--atgtcattattccttaacag----------

upper sequence: GLYMA17G05530.4 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G008611_T02 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgca-tgaaatagtcacttcatttccacatttattcttac----agcttttggtgttttccattctaatggtaggatgttttggttctgtgattcaatttatcag
 ||||| || || |||||||| ||||| ||||| || ||||| |||||||| |||||||||||  |||| ||||||| | ||  |   |   || |   |    |  ||| || |    | ||||||| | |     |||   | ||   ||||  |  |||  | |    ||   ||| 
AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcaccattttttaaaccctttgtgcattgttgccatgaacttttggagctgctgtttcatctcgtt--atgtcattattccttaacaggatgc-tca-

upper sequence: GLYMA17G05530.4 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G008611_T01 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaatagtcacttcatttccacatttattcttacagcttttggtgttttccattctaatggtaggatgttttggttctgtgatt-caatttatcag
 ||||| || || |||||||| ||||| ||||| || ||||| |||||||| |||||||||||  |||| |||||||       ||||  |  |||||    |    ||  | ||  | |||   |   |  ||  |   |  |  |  | | ||| ||| |||     ||| |||
AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAGg-------tagtgtcaccattttttaaaccctttgtgca-ttgttgccatgaacttttggagctgctgtttcatctcgttatgtcattattccttaacag

upper sequence: GLYMA17G05530.4 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 5'ss of exon 7
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgca-tgaaatagtcacttcatttccacatttattcttacagcttttggtgttttccattctaatggtaggatgttttggttctgtgattcaatttatcag
 ||||| ||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||||||| | |||||| |   ||| | ||    ||||  | ||    |||||  | ||||||    | ||| || |||  | |  || |   ||    |||  |||
AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaatgg---ctttacttg---attttgttttgttccttttcat-ttttcctcattcatgttatgattctgtcatttt---atcttgttt-ccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709423|gb|BF009147.1|BF009147
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|193439256|gb|FK406341.1|FK406341
EST:     GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|207750871|gb|GD726126.1|GD726126
EST:     GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|207753671|gb|GD723269.1|GD723269
EST:     AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|15285660|gb|BI469551.1|BI469551
EST:     CGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: CGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|11687387|gb|BF595063.1|BF595063
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|207772228|gb|GD743577.1|GD743577
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTGGAAAATG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATG
EST: gi|207711809|gb|GD693189.1|GD693189
EST:     GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|7925242|gb|AW831268.1|AW831268
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|208150143|gb|GD950790.1|GD950790
EST:     TTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: TTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|207805431|gb|GD776877.1|GD776877
EST:     GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|193616957|gb|FK571627.1|FK571627
EST:     TTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: TTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|208265654|gb|GE063182.1|GE063182
EST:     GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTAT-AATGATTTGACTG
genomic: GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|208049063|gb|GD846664.1|GD846664
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGGATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|193680125|gb|FK620755.1|FK620755
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|193430767|gb|FK394203.1|FK394203
EST:     GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|5175311|gb|AI759644.1|AI759644
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|6454619|gb|AW185302.1|AW185302
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|208092344|gb|GD889381.1|GD889381
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|21889247|gb|BQ742460.1|BQ742460
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|208277576|gb|GE079567.1|GE079567
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|19053974|gb|BM732641.1|BM732641
EST:     AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG
EST: gi|208067943|gb|GD861453.1|GD861453
EST:     GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG                         GATGCTCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAGgcatgaaata ... aatttatcagGATGCTCAAAGTGCTATAAATGATTTGACTG