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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTTGGTTCTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaactcattttgtaaatgctagtttttcatttttaacatgcttcacgtgatgtatgaatgaatattgtgaagtttatatatgataattgaatc...

Basic information

species Glycine max
transcript GLYMA17G05530.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285660|gb|BI469551.1|BI469551
EST:     CAGGATGCTCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193616957|gb|FK571627.1|FK571627
EST:     CAGGATGCTCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193490170|gb|FK455505.1|FK455505
EST:     TCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: TCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208052705|gb|GD850028.1|GD850028
EST:     ATGCTCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: ATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193500769|gb|FK464566.1|FK464566
EST:     TCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: TCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193632381|gb|FK584191.1|FK584191
EST:     CTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208150143|gb|GD950790.1|GD950790
EST:     CAGGATGCTCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|21637806|gb|BM107961.1|BM107961
EST:     GATGCTCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAARGGG
genomic: GATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193624299|gb|FK573395.1|FK573395
EST:     TCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: TCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTTTTGGTTCTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaactcattttgtaaatgctagtttttcatttttaacatgcttcacgtgatgtatgaatgaatattgtgaagtttatatatgataattgaatc

- - - - - - - - - - - - - -  AGGATG