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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTACCAATTTTTATTCTCCAAACATGAACGTTGGAAATGAAAACTTTCTTCCACTTCTCAAACGACTTGATGAATGCATCTCgtgagtaaaaatccagtttcattctagtacttcgtaactttgtcatgctcagtgtatagaatgtcacaaacgatttaacgttggctttatctgctttgtagttgaacaataaatgtgatcatttacattttttatcttttaatttag

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G825854_T02 (Zea mays), 5'ss of exon 8
GTTGCTACCAATTTTTATTCTCCAAACATGAACGTTGGAAATGAAAACTTTCTTCCACTTCTCAAACGACTTGATGAATGCATCTCgtgagtaaaaatccagtttcattctagtacttcgtaactttgtcatgctcagtgtatagaatgtcacaaacgatttaacgttggctttatctgctttgtagttgaacaataaatgtgatcatttacattttttatcttttaatttag
||  | | ||  ||||| |||| ||| |||||| ||||||||||| | |||||||||||  | || || |||||||| || ||||||| ||||  ||      | |||  ||    ||  |   || ||  |    |||   ||   |  || |    ||  ||| |   || |  ||| || | ||                                              
GTATCAAGCAGCTTTTACTCTCAAAATATGAACATTGGAAATGAACAGTTTCTTCCACTGTTGAAGCGCCTTGATGATTGTATCTCgtaagtagtaac-----tgcatagtaaagttttatg-tttggttct----agtac-taagtttccagagctaatgcaacatcccctgttgctgatt-gcag----------------------------------------------

upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 9
GTTGCTACCAATTTTTATTCTCCAAACATGAACGTTGGAAATGAAAACTTTCTTCCACTTCTCAAACGACTTGATGAATGCATCTCgtgagtaaaaatccagtttcattctagtacttcgta---actttgtcatgct----cagtgtatagaatgtcacaaacgatt--taacgttggctttatctgctttgtagttgaa--caataaatgtgatcatttacattttttatcttttaatttag--------------
|||||||||| ||||||||||||||||||||| ||||| ||||| |||||||| || || || ||||| |||||||| ||||| |||| |||  |  |    ||| |   |||| ||| ||    | | | |  | ||     ||  | |  ||     |  |  |||  | |    | |  |  |||  || ||   |||  || |   |||  |     | |||||   | | || ||||                
GTTGCTACCAGTTTTTATTCTCCAAACATGAATGTTGGCAATGAGAACTTTCTACCTCTGCTTAAACGGCTTGATGAGTGCATATCgtaagtgtattt----ttttaaattagtcctttgtggataatctatggttctgagctagcttttttaaccatgctgattattaatgataccgacaatcactggcttttatgagaatacagtttctgtagtttgaaaaattttccttatctttattttttttaccatgcttag