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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTGgtcagtattcatttttacataattttgatttggatccttatttttgtcaattatgtctgcattcattcttgtgatatgttttgcttcattgcag

Basic information

species Glycine max
transcript GLYMA17G03570.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 5'ss of exon 8
CAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTGgtcagtattcat-----ttttacataattttgatttggatccttatttttgtcaattatgtctgcattcattcttgtgatatgttttgcttcattgcag----
|| |  || || ||||| |||||||  || || | ||| || || |||||||||||| ||||||||||||||||||| ||||| || ||||| || ||  || ||||||||      || ||  || |  ||  || |||||  || | |   |||||| | |    | ||     | || | ||||   |  ||| |     
CATGATTTCTTCCGGAATCTGATGGGTGTTTTTAAAATATGCGAGGACTTGGAAAATGTTGATGGCCTTCACATGATATTCAACATTGTCAAGGGAATCAgttagtattcacaaacattataattattcatgtcttagatccacatatatcagaattatcttt----tgatgtccattatttcttttatctttttgtacgcag

upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 8
CAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTGgtcagtattca-tttttacataattttgat-ttggatccttatttttgtcaattatg---tctgcattcattcttgtgatatgttttgc------ttcattgcag
|||| |||||| |  |||||||||||  |||| || || || |||||||||||||| || ||||||||||||||||| | ||| || |||||||||||  ||||||  ||  ||||||| |   | || |  |  ||| | | ||| | |  |||||   | | | ||  ||      |      ||||      ||  || |||
CAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCAgtcagtgctctctttttacttctctctgctactatatcttcaatttaggctcttatgatttatccgtttgttggcactaagaaccttgcgtgttattacttacag