Sequence
atgc intronic sequence ATGC exonic sequenceCCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagcaaatcccaattgtcactgtatgtttttataggttttgtttttggtagttttgttgtcttgaatctgcatacatgttaaactgaattgatt...
Basic information
species | Glycine max |
transcript | GLYMA17G03430.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 8
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagcaaatcccaattgtcactgtatgttt-ttataggttttgtttttggtagttttgttgtcttgaatctgcatacatgttaaactgaattgatt-
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CCTCCTAAGTCTGTTGACACAAAATCTCAAGAAAAGCATCAAGAAAGAGGCTTGCTGGACTATTTCAAATATTACTGCTGGTAACAAAGATCAGATACAGgtatgtgtacagacttaaaaaatactgacatgctcatcattctactaagtcatgaaggatttgt-gtagtgcatactta-gtagttttaattgtgttccctc
upper sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 8
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagcaaatcccaattgtcactgtatgtttttataggttttgtttttggtagttttgttgtcttgaatctgcatacatgttaaactgaattgatt---
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CCTCCTGAATCTGTTGACGCAGAACCACAAGAAAAGCATTAAGAAAGAGGCATGCTGGACTATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAGgtaacatacagaaagtcctatgccacatttctactaatttgtttttacagttactaagtggatgacatcaaatttttcta---gtccagtggttatgatgcaa
upper sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 7
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagc--aaatccca-attgtcactgtatgtttttataggttttgtttttggtagttttgttgtcttgaatctgcatacatgtta-aactgaattgatt
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CCTCCTGAATTTATTGACACAGAACCACAAGAAAAGCATTAAGAAAGAGGCATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAGgtaacatacttgaagtcctatgccatgaatttgtatttacagttactaagtggatggca-tcaaatttctctggtgcaatggttatgttgcaaatgagtgt---
upper sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 5'ss of exon 8
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagcaaatcccaattgtcactgtatgtttttataggttttgtttttggt---agttttgttgtcttgaatctg-catacatgttaaactgaattgatt
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CCTTCTGAGCCTGTTGACCCATAATCATAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAATATTACAGCTGGAAACAAGGAACAGATCCAGgtaagcaagtacaccttg---gaaatttaatgcctct-tagctttattatttggtttgattttaaggaacttgtagctggcttttattggctgcaaaattttcc
upper sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S230_50V6.1 (Physcomitrella patens), 5'ss of exon 7
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaa-gccagcaaatcccaattgtcactgtatgttt-ttataggtt--ttgtttttggtagttttgttgtcttgaatctgcatacatg--ttaaactgaattgatt--------------------------
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TCTCCTGGCTCTCCTGACCAACAATCACAAGAAAAGCATTAAGAAAGAAGCTTGTTGGACTATTTCGAACATAACCGCAGGAAACAAGGATCAGATTCAGgtattaatttccactctccttattcaatccctgttgattggagattgcttttattttccactcctgttcactgcactgtgtagtcatacttttaattgatgtactataatcgttttcggttgtctactacag
upper sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S165_51V6.1 (Physcomitrella patens), 5'ss of exon 8
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagcaaatcc-------caattgtcactgtatgttttt----ataggtttt--gtttttggtagttttgtt--gtcttgaatctgcat----acatgtta-aactgaattgatt-------------
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CCTGCTCGCACTATTGACCAACAACCACAAGAAGAGCATTAAGAAAGAAGCATGTTGGACTATCTCCAACATCACTGCCGGAAACAAAGAGCAAATTCAGgttggattgtaatttcgtctgcgcattagtttctgttcgttgttgtcaataggtttgaagttcgtcaaaatatggttctgttctgaatattggctctggcaccccatgactaaagctcctgtacattccgcag
upper sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S43_141V6.1 (Physcomitrella patens), 5'ss of exon 9
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagcaaatcccaat-tgtcactgtatgtttttataggttttgtttttggtagttt-tgttgtcttgaatctgcataca--tgttaaactgaattgatt-------
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TCTTCTCGCTCTTCTCACCAACAACCACAAGAAAAGCATTAAAAAGGAAGCCTGCTGGACTATCTCCAACATCACTGCTGGAAACAAGGATCAGATTATGgtacgaactcaaaatctgttctatgatcaaactttggtttagatttggttggtcccaatcaatccttaactgagtggtaatgttactgatgtcgtggattattttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19345923|gb|BM890803.1|BM890803EST: CTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAG ACTGTTATTGAAGCTGGTCTGGTTGCACCCCTTGTCAATCTTCTTCAAAAT
genomic: CTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagc ... atatctgtagACTGTTATTGAAGCTGGTCTGGTTGCACCCCTTGTCAATCTTCTTCAAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGgtaagccagcaaatcccaattgtcactgtatgtttttataggttttgtttttggtagttttgttgtcttgaatctgcatacatgttaaactgaattgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC