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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagtgagctctgtaggtccaaatgtgtcaatggtctatacagaaataacatgcagtataactgcttgatttctccacagtgcaaatgaattcttcataaaccatttaatttgataaaaatatatatatatttcttcag

Basic information

species Glycine max
transcript GLYMA17G02680.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02680.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 10
CCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagtgagctctgtaggtccaaatgtgtcaatggtctatacagaaataacatgcagtataactgcttgatttctccacagtgcaaatgaattcttcataaaccatttaatttgataaaaatatatatatatttct-tcag
 ||||| || ||||| ||||||||||||||||||| ||| || ||||||  ||||||||| |||||  | ||||| || || || |||||||||||||| ||          |||||  |          ||   |   |   ||  |    |   ||  |||  ||| ||||||  | | ||   |||||  |||       ||||  | |||||    |||| |  || ||| | ||||
TCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGgt---------ttgtagagc----------aaccattcttctggagtt----tattgtcaaacaactttatttct--ataatg---atgaaaacttacatcttcatt--agttgattttgatatgtggatttttgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633300|gb|DW246702.1|DW246702
EST:     CATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACT                         ATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCT
genomic: CATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagtgagc ... atttcttcagATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCT