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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaag

Basic information

species Glycine max
transcript GLYMA17G02640.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataa-aatgttgtataa------taatgttttcattttctgtgtgtaattaag
  | ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | || |||||||||||||| || || ||||| ||   |  | || |  |||  | || ||   ||| || ||| ||| | | | ||      || |   ||||| |    | |   || |||
CTTGTTGCCTGAAATATTTAGCTCTGCTGAAACATTTGATGAATGGTTTCAAATTTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtgagtaatataactcc--catgctcaatggctcattatgctaataatttgggacaacctgcatagttcattcatgtaaattcttctatgaag

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaag-ggtctattgtgataaaatg--ttgtataataatgttttcattttctgtgtgtaattaag
  | ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||  ||||||| |||||||| || || || |||||||    |      ||   ||| | ||  | |  ||  || |    |   |||||| ||     |  ||| ||     || |      
CTTGTTGCCTGAAATATTTAGCTCTGCTGAGACTTTTGATGATTGGTTCCAAATCTCAGGGGAAAATGATCAACATGAAGTTGTTCAGCAGCTTCATAAGgtaacagatttgatatccatattctcaattgatagatcatgttggttttccttgtatgatttgtgtaacatgttacacttgaag-----

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtat-aataatgttttcattttctgtgtgtaattaag
  |  | |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||  |||| ||||| || || || || || |||||  |  |  ||   || | ||   |||   | || |    |||||||   | | ||||||  |||| |      | || ||     
CTTGCTCCCTGAAATATTTAGCTCTGCGGAAACCTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAACAGGAGGTGGTCCAGCAGCTTCATAAGgttgggatataattatcatgataactaat--tatagtactttaaaatgaactcttaataattgtttcttgcaacttttgcaaag---

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 5
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaag---ggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaag
  |  | |||||||||||||| ||||| || || |||||||||||||||||||| ||||| ||||||||  |||| ||||| || || || || || |||||  |  |  |   ||| | ||    ||     ||   ||   || || | || ||||||  | || ||      | ||   |      
CTTGCTACCTGAAATATTTAGCTCTGCGGAGACCTTTGATGAATGGTTTCAAATATCTGGGGAAAATGATCAACAGGAGGTGGTGCAGCAGCTTCATAAGgttgggatatagttttcgtgatcaccaattttagtaccttaaaatgaactctt-tataattgt-ttctcgcaacttttgcaaag-----

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaag
|||| | |||||  | |||||||| || ||||||||||| || ||||||||||| ||||||||||| ||| | || || |||||||||||||| ||||||||| |   | |   ||      | | ||||   |||| |  |||  | || |   | |   ||| | |  ||| |||         
TCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGgtatgtactcatattt------tatcaagg--ttattctc-taagttcttatgcta-atcatttacctcatctttgtag-------

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttc-tgtgtgtaattaag
|||| ||||||| || |||||||| || || ||||||||||||||||||||||| |||||||| |||||| | || || ||||| |||||||| ||||||||| |  |     |   ||| |||    | || |||| || |    ||| |  |  ||   |  |   |||| ||| | |  |||  
TCTTCTGCCTGAGATTTTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAATTTCTGGTGAGAATGACCAGCAAGAAGTTGTGCAACAACTGCACAAGgtatggat--gcacccattccttgcattgagtttattctgttctg-tgt-gagtcgtaggttaattgctttcatgtatctttttag-

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 8
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaag
|||  |||| || ||||||| ||| ||||| ||||||||||||||||| ||||| ||||| || |||||| | || |||||||||||||| || || ||||||| ||   |  | || | ||| || ||  ||||   | ||   || |  | || | |  |  |   | | | | |||  || ||
TCTACTGCCCGAGATATTTAATTCAGCTGAGACTTTTGATGAATGGTTCCAAATTTCTGGAGATAATGACCAGCAGGAGGTTGTTCAACAGCTTCATAAGgtaaaccc-aagacctcctaattttttagc-tctacctt-atttcatctcatttactgaaatggtttctgtatttctgttttttag

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ32950 (Selaginella moellendorffii), 5'ss of exon 7
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaag
|||  |||| || || || || ||||||||||| || || |||||||||||||| ||||| ||||| ||| | || || ||||| || || || ||||||||| |  |    |||  | |  | |     ||| ||  ||||||  || | || |                               
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgcta-tgcgctatc----gtcgatgctgataa--tgatttacag------------------------------

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ15818 (Selaginella moellendorffii), 5'ss of exon 7
TCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaag
|||  |||| || || || || ||||||||||| || || |||||||||||||| ||||| ||||| ||| | || || ||||| || || || ||||||||| |  |    |||  | |  | |     ||| ||  ||||||    || || |                               
TCTGCTGCCGGAGATTTTCAGCTCTGCTGAAACATTCGACGAATGGTTTCAAATATCTGGCGAAAACGACCAGCAAGAAGTTGTGCAGCAGCTTCACAAGgtatgaatgagcgcta-tgcgctatc----gtcgatgctgataatg-attttacag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208261822|gb|GE059589.1|GE059589
EST:     GGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAG                         GTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGT
genomic: GGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttg ... tgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGT