Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcatgagacatgtacaagattgctactaatgatactacttaactgattaatttccctgctgcag

Basic information

species Glycine max
transcript GLYMA17G02560.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 9
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttca--acacattc-atgagacatgtacaagatt--gctactaatgatacta--cttaactgattaatttccctgctgcag---------
|  |   ||| || | |||||| || || |||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| |||||  | | | |  |||   || |||| |      |   |  || ||  | |  ||   | ||||  |  |||| | |  |||   |  | |           
TGCTAGATTTGAGCGGCATTCTCACCGTATTCTTCTGTGGTATTGTAATGTCACATTACACTTGGCATAACGTCACAGAGAGTTCAAGAGTTACAACAAAgtaaattataattctcattccatattctactgtttaatgattagcttcagttcgtagaaaaactaaacaaaacttactggtttgttttgtcctttcacctcag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 8
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgt--------gaaattcttcaacacattcatgagac-atgtacaagattgctact-aatgat----actacttaactgattaatttccctgctgcag-----------------------------
|  ||  ||| ||||  ||||| || || |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||| || || ||||||||||| ||        |   |  |||| || | | || |  | || | ||   ||   |||  |||||    | ||  ||  |  | || ||   |    ||                              
TGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCAAgtaagtatctttatggtttgtttcagcaaacttattattccattttcatttttttaacttgatgatttcaaatatgtatttcctgaaattgtgtatcacactgatgcttctctaattgtatactctatag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 7
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcatgagacatgtacaagat-tgct--actaatga-tactacttaactgattaatttccctgctgcag--------
|  |   | | |||| |||||| || || |||||||||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| |||||||||||  |     |  |||     |||   ||  ||||    | | ||||  |  || || | ||   | | |   |  |   |||  | ||         
TGCTAGATCTGAGTGGCATTCTTACCGTATTCTTCTGCGGCATCGTGATGTCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattccttgtcatttt-ttcgctagtaatgtttctgttctgcttaataaacgaatgctgactgaattccttttgggcctttttcattcacttag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 10
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcatgagacatgtacaagattgctactaatgatactactta-actgattaat----------ttccctgctgcag
| ||     | ||||  ||||| ||||| |||||||| || || || ||||| || ||||| ||||||||||||||||| ||||| || || || |||||||| ||    |       ||  ||    ||  |     | | ||  ||||  | | | ||  || ||| |||  |          |||| || |||||
TGTTGGACCTGAGTGGAATTCTTACTGTCTTCTTCTGTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGTTCTAGGGTTACCACCAAgtatgtcttttctggattcagtttttctagcaaaaattatggttcttacttcttacattatgtatactaattgctgattttctctttccatgttgcag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 10
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattct-tcaacacattcatgagaca-----tgtacaagattgctactaatgatactacttaactgatta-atttccctgctgcag
||||    || ||  | ||  ||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |  || |  || || || ||||| ||    || | |   | || | || ||| |     | ||| |  ||| |     ||||   ||| |||||  ||  ||| | ||  | ||
TATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAgtaagtttctttttcttctcccaataattagaaaataactctactaatttgttgtgcttgat-tgactaaactgtatacgttttcttggcgtag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 10
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattcttcaacacattcatga--gacatgtacaagattgctactaatgatactacttaactgattaatttccc-tgctgcag-----------------------------
| || | ||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| || || || | ||  |  |  |  |  || ||  |      | |     ||  | | |      |||||||  |    || ||| |                             
TGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCAAgtatgttaa-ttatccaggaagtgaagtattgaaattcattcatcttcattccattttgccaaaatgttgattaaactgtgatgttgctgatgttacagttcttaccaaatgtttgcag