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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGGTGTGGATGCAAGGCATGGTGCAAAAACTCAAGATGAGGAAGGCAGACTGAAATTCCGTTTCCAGTCCTTTGTGTCTTTCAATGTTGCAAACAGgtacactggggacattttatgttatcttacaggcttgcttcttctatatgcttatttgcatatctgcaagaccaccgtaacttctttgtattttattttt...

Basic information

species Glycine max
transcript GLYMA17G00850.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00850.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 6
GAAGAGGTGTGGATGCAAGGCATGGTGCAAAAACTCAAGATGAGGAAGGCAGACTGAAATTCCGTTTCCAGTCCTTTGTGTCTTTCAATGTTGCAAACAGgtacactggggacattttatgttatcttacaggcttgcttcttctatatgcttatttgcatatctgcaagaccaccgtaacttctttgtattttattttt-
  |||||  |||| || |||   |||||||| || || |||||||||||||| || || |||| |||||| || ||||||||||||||||| ||| | | ||| | ||  ||   |||    | | |||   |||   |   |   |   | |||   | |      ||||        ||  |  |  || ||  ||   
ATAGAGGACTGGACGCGAGGATAGGTGCAAAGACACATGATGAGGAAGGCAGGCTTAAGTTCCATTTCCACTCATTTGTGTCTTTCAATGTGGCACAAAAgta-agtgatgagtctttccaatgttttatttgctatttgtgtgcttgctcctatcaacgtcctactaagaatttatgtaccccaatcaatattgcttagt

upper sequence: GLYMA17G00850.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0194g00100.t01 (Vitis vinifera), 5'ss of exon 6
GAAGAGGTGTGGATGCAAGGCATGGTGCAAAAACTCAAGATGAGGAAGGCAGACTGAAATTCCGTTTCCAGTCCTTTGTGTCTTTCAATGTTGCAAACAGgtacactggggacattttatgttatcttacaggcttgcttcttctatatgcttatttgcatatctgcaagaccaccgtaacttctttgt--attttattttt
| |||||| |||||||||||||||| |||||| | || ||||   |||| || ||||| |||| |||||| || ||||| ||||||||||| ||| | ||||| | ||   ||||  ||   || | |      || ||  | |  |  | || |     | |||   |   |    ||  || ||| |  |  ||||| | 
GCAGAGGTATGGATGCAAGGCATGGCGCAAAATCACAGGATGCACAAGGGAGGCTGAAGTTCCATTTCCACTCTTTTGTCTCTTTCAATGTAGCACAAAGgta-attgacaacatgatagaataccatcaccttttcctattgcattgagattttcctggtttctattaattccttttattttatttcttaaaattattat-