1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATCgtaagttttattgctggtttagtaccttattgtattaaaaaaattcttgctcccaataataggaagaaagttcacagtcgctgacaatttaaagcaagac...
species | Glycine max |
transcript | GLYMA16G33380.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATC GAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGTACCAAATTCACAGEST: gi|12774002|gb|BG238929.1|BG238929
genomic: TGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGTACCAAATTCACAG
EST: TGCT-TTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATC GAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGTACCAAATTCACAGEST: gi|16276828|gb|BI942066.1|BI942066
genomic: TGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGTACCAAATTCACAG
EST: TGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATC GAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGTACCAAATTCACAGEST: gi|162286128|gb|FC456630.1|FC456630
genomic: TGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGTACCAAATTCACAG
EST: TGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATC GAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGT
genomic: TGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATCgtaagtttta ... taaactgcagGAGGTATAATGCTGGGGCTTGTAAAAAGCTGCATAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATATGCCAAAGCTTTGGAGGATGCTATTGCTGTTCTTGACAAAATTGCAATGCCTATCAATGCTCAGGATCgtaagttttattgctggtttagtaccttattgtattaaaaaaattcttgctcccaataataggaagaaagttcacagtcgctgacaatttaaagcaagac
- - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaagaaa