Sequence
atgc intronic sequence ATGC exonic sequenceTCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaagtaaaggatctagaatgcagttgttgctaactggtttattgtatctcatttatattgcaactgaaatctgcaatttgacaagcaattgcaattata...
Basic information
species | Glycine max |
transcript | GLYMA16G33080.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaag-taaaggatctagaatgcagttgttgctaactggtttattgtatctcatttatattgcaactgaaatctgcaatttgacaagcaattgcaattata---
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GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttc---tcgaacgcacaggagaactgcgcctcatt-atatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G101791_T02 (Zea mays), 5'ss of exon 7
TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaag-taaaggatctagaatgcagttg--ttgctaactggtttattgtatc--tcatttatattgcaactgaaatctgcaatttgacaagcaattgcaattata
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GCTGAAAGTCTTAACATCAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcataatattgacctcccaatggccttgttagcttgtgt-ttgttttggttgttgacatattgagtcgcattca-aatcaaactttcatgtctgagt---
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G33360.1 (Arabidopsis thaliana), 5'ss of exon 7
TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaagtaaaggatctagaatgcagttgttgc---taactggtttattgtatctcatttatattgcaactgaaatctgcaatttgac-aagcaattgcaattata
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GCTGAGAGTTTAAACATTAGCCGGGATGTTTCTGGGGAAGGTGTTCAACAGGCACTTTTGAAATTACTGGAAGGCACTgtaagtggattgctttattaccctttgatgcatatactgaaataattcttcactagacatgagacacttgcatagcgagttatagtgaagtatctagaag----
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 7
TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaagtaaaggatctagaatgcagttgttgctaactggtttattg-tatctcattta--tattgcaactgaaatctgcaatttgacaagcaattgcaattata
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GCTGAGAGCTTAAACCTTAGCAGAGATGTTTCTGGTGAGGGTGTTCAGCAAGCATTACTGAAAATGCTGGAAGGAACTgtgagt---ggatcagttttacattcttcagtgttttatatatttctatgtcatcaaacttttatgacttattttagaatgattgctggttgtggtgattcta
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S98_222V6.1 (Physcomitrella patens), 5'ss of exon 8
TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaagtaaaggatctagaatgcagttgttgctaactggtttattg-tatctcatttatattgca---actgaaatctgcaatttgacaagcaattgcaattata-------------------------------
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GCTGAGAGTAAAAATATTAGTCGGGATGTATCTGGTGAAGGTGTTCAGCAGGCACTATTGAAGATGCTTGAAGGCACTgtacgtttcttcttttgtcctctctcacaattctgcagtttcttgctatattttctgccaagcactaatgcaggtatccagaggggataacgaaggaaactagtttcgatcctgattcagtgtgccttgaaacag
upper sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S163_100V6.1 (Physcomitrella patens), 5'ss of exon 7
TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaag-taaaggatctagaatgcagttgttgctaactggtttattgtatctcatttatattgcaactgaaatctgcaatttgacaagcaattgcaattata-------------------------------------------------------
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GCGGAGAATATGAACATTAGCAGGGATGTATCTGGTGAAGGAGTTCAGCAGGCACTTTTGAAGATGCTGGAAGGAACTgtacgattcaagttctcttctaaaacttcgacatatttgct-gttgcacagcgtatcc-ttgtggttcaagtatgtatgttacatggggatgactcttctatgaatgttgatacgttataattctgattgtagtaactgagtaagtcgtgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16276814|gb|BI942058.1|BI942058EST: TTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACT ATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAAC
genomic: TTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaagtaaag ... tattgtctagATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaagtaaaggatctagaatgcagttgttgctaactggtttattgtatctcatttatattgcaactgaaatctgcaatttgacaagcaattgcaattata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA