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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGgtatcttgttgaattttaaatgttaaactcattagcttttcataaagtaatattatattgtgtatcaatctttcctctaccacttgctatatcaggattgtgcagtgggtttactatttgctttgctcccagttttgggtggtaacag

Basic information

species Glycine max
transcript GLYMA16G32820.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32820.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g03590.2 (Oryza sativa), 5'ss of exon 1
GTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGgtatcttgttgaattttaaatgttaaactcattagcttttcataaagtaatattatattgtgtatcaatctttcctctaccacttgctatatcaggattgtgcagtgggtttactatttgctttgctcccagttttgggtggtaacag
             | ||||||     ||| |  ||||| ||||||| ||||||||||||||| || |||||| |||||||      ||| |||  |     |    ||||  | ||    | ||  | |  ||  || |   | | |        |   |  | ||  |  || | | |  ||    |||                                    
-------------TAGTGGAGAAAGGTAGCACCAATGCGCTTCATGGTCAAGTTACAATTGGTACACTTATTCTTCAGgt------ttggattccatcctgttctgtcatccgtttacacttaaacactcctagctttta-gttagtgaaaa---tgatatgtacttgaaaagaacttt--agcaatttt------------------------------------

upper sequence: GLYMA16G32820.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G51710.1 (Arabidopsis thaliana), 5'ss of exon 12
GTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGgtatcttgttgaatttta--aatgttaaactcattagcttttcataaagtaatattatattgtgtatcaatctttcctctaccacttgctatatcaggattgtgcagtgggtttactatttgctttgctcccagttttgggtggtaacag
                     | |  | ||     | || |||   ||    || || ||  |  |  ||    |    ||       ||||| ||  ||||  |||    | ||   |||    ||||| |  |  ||||  |  || || |  | || | ||   ||      |  | ||   |      |  |||| |||  || | | ||| |           
-------------------GACTGTGTTGTTGGTTTACTATTCGCCTT--GCTTCCAGTTTTGGGTGGTAACAGTGGTTTACTACAAGGAATTATATCAATGGGAAAGCTgtaagtggttc-cctagtaaga--agtttgtccaggaacctcttatatatc-ctcattacc----gtctctgacataa----aacattttctt--cttctaatttag-----------

upper sequence: GLYMA16G32820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 11
GTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGgtatcttgttgaattttaaatgttaaactcattagcttttca-taaagtaatattatattgtgtatcaatctttcctctaccacttgctatatcaggattgtgcagtgggtttactatttgctttgctcccagttttgggtggtaacag
||||| |||||  |||| || ||||||| ||||||||||||||||| ||||||||| |||||||| |||||||| |||||||       | ||| |  ||  | |   || | |  || | |||  ||  |    |       | | | |||  |  |   |     || ||   |   || | |   |                                      
GTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAGgtat-------agtttcagctggaagatctatcaacaattgaataacatatcaaggcaaaaaacttgattttttggtgcatatccatacatttcttcaccatggaatatttcag-----------------------------------

upper sequence: GLYMA16G32820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 12
GTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGgtatcttgttgaattttaaatgttaaactcattagcttttcataaagtaatattatattgtgtatcaatctttcctctaccacttgctatatcaggattgtgcagtgggtttactatt-tgctttgctcccagttttgggtggtaacag
  | |   | | |||||  |      |  |     |||||  ||  ||   ||   ||  | | |     |||   ||| ||  | |  |     ||    | |   ||||    | | ||   | | | || | |    | | ||| |||| | |  || ||  ||         |||    ||  ||| ||||  ||  ||                        
--GATTGTGCTGTTGGTTTAC-----TCTTTGCTTTGCTCC-CAGTTTTGGGTGGTAACAGTGGCCT---TTTGCAAGGAATGATATCAATGGGAAAGCTgtgagtccatt--tctatgattttgca-tgttttctgtgatcttaatttttcttatttcaattattagccatcctgtgtatgatgaattttctatgatgactt------------------------