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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgttgtaatattttctctgttagttttggtcctttatagattcaattacatcttggttttgtgactttatagctttgctttctgatttttcag

Basic information

species Glycine max
transcript GLYMA16G30030.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 7
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgttgtaatattttctctgttagttttggtcctttatagattcaattacatcttggttttgtgact--ttatagctttgctttctgatttttcag----
|| || ||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||   ||| |||| |||     |       | ||||   |||| |||   |  | |||||  | |  || |  |||  || |    || |||      
ATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGgtcagaatgttttttct-----tgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcag

upper sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S387_39V6.1 (Physcomitrella patens), 5'ss of exon 7
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgtt-gtaatattttctctgttagttttggtcctttatagattcaat-tacatcttggttttgtgact--ttatagctttgctttctgatttttcag--------------------------------------------------------------
||  | |  ||||| | ||     || |||||||||||||||||||||||||||||||||||  || |||  | | |  || | |    || ||| || |   |   |  |  |    ||   || |  || ||  |||||||      | | ||                                                               
ATTTCTGCTCAATCTTTTCTCCAGTCTTTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgtaagtgataaatgcacacttggctagtttcatttgtatagaaagcatgtagatgctcttcaagattgattgta-ttttgcttatcttctatacaattagttttgttgctgttaggacttcctctctaaaagagcttcacatggctctctactggcag

upper sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S8_299V6.1 (Physcomitrella patens), 5'ss of exon 9
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgt---tgtaatat-------------tttctctgttagttttggtcctttatagattcaa-----ttacatcttggttttgtgactttatagctttgctttctgatttttcag----------------------------------
||  | |  ||||| | ||     || || ||||||||||| ||||||||||||||||||||   ||||| ||              |  | || |   || |   || ||||| || ||     ||| || | | || | |    |   ||   |     ||   | |  |                                   
ATTTCTGCTCAATCTTTTCTCAAGTCCTTTAAGGGAAGCCCGTATTGGATGGCTCCTGAGgtatgtgtaaaatgcaatcctagtagctcttttgctcaattagcatctatatagttttaaagtggttatatttggcttatatttaatacaagtagtaggacctatctctctaaatatgagcctttgtgcatggtttccttctgatag

upper sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 5'ss of exon 9
ATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgt---tgtaatattt-tctctgttagttttggtcctttatagatt-caatta----catcttggttttgtgacttta--tagctttgctt---tctgatttttcag-----------------------------------------------------
||  | |  ||||| | ||     || ||||||||||||||||| |||||||||||||||||   ||| | |  | |   || |  |  ||    |||| |  || |||  |    ||||    |  | ||  ||||    |  || |||   |    |  |  ||                                                     
ATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAGgtatgtgtcaaacgtataattgattatgctgactgtttacatcttacaaacatactcatccaaatcgtctgcatttagccggtattacttaaatgcagtgatggagctgttagagattcccctcctcaattacgatttaacatgattcttaattggcag