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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatacttgcccaatgactatgtaagcaattaattacgtgaccagattttctagttactgatcttggatgtgaacag

Basic information

species Glycine max
transcript GLYMA16G29040.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 10
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatac--ttgcc-caatgactatgt---------------aagcaattaattacg---tgaccagattttctagttactgatcttg--gatgtga-acag
| || || ||||| |||||| |||||||| ||||||| ||||||||||||| ||| ||||| || ||||||||||||||||| || |||||  |||| ||||| ||||  |||   | |||  | |||               |   | ||| ||      | | |||| || |   | ||| ||||||  |   ||  ||||
ACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgtttctatgcttctgtcttctcagcttctttatttatttagttttagtttaaacagagttccatataactcatcttgtggccctggtacag

upper sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 9
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatac--ttgccca-atgactatgtaagc-aattaattac-gtgaccagattttctagttactg--atcttggatgtga-acag
|  | || ||||| |||||| |||||||| ||||||| ||||||||| ||| |||  |||| || ||||||||||||||||| || |||||  |||| ||||| ||||  ||||    |||  | |||     |  |  |||  ||   || | ||     | |||   ||  |||   ||  ||||
ACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgcttgcatgcttgtgtcttttagcttcttattgtagacaaagttctatataactacaattgtggccctggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561891|gb|CD487729.1|CD487729
EST:     ACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAG                         TTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCT
genomic: ACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatactt ... atgtgaacagTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCT