Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAATTGAGTATCTTTGGAGAGCAAAGCAGCCGTATAATGTATCTGTTGCTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttttgttcttttgcatataacacatgtatgttaattgattatcccctagtacattatggttattgaaagttgttgtaagagtttgatataaca...

Basic information

species Glycine max
transcript GLYMA16G27220.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27220.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G170595_T01 (Zea mays), 5'ss of exon 7
TATAATTGAGTATCTTTGGAGAGCAAAGCAGCCGTATAATGTATCTGTTGCTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttttgttcttttgcatataacacatgtatgttaattgattatcccctagtacattatggttattgaaagttgttgtaagagtttgatataaca
 || || |||||| | ||| | || |||||||| |||||||| ||||| || || ||| |||| ||||||||||| || || ||||| || ||||| ||||| |  ||||| |    |  | | ||| |  | | |    |  | ||  |      ||  ||    || |||||  |||      ||   ||  |     
CATTATCGAGTATTTGTGGCGGGCCAAGCAGCCCTATAATGTTTCTGTGGCCGCAGAAGTTTCAGCATGTGCAGCTTTACAGAATCCAACTTATCTGGAGgtatcacttttatgaaatcac-tgtaatagttctttcc--acagtttggctttgcctaacttgattttgttgaaccttggacctggacaatggaag----

upper sequence: GLYMA16G27220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g02180.t01 (Vitis vinifera), 5'ss of exon 3
TATAATTGAGTATCTTTGGAGAGCAAAGCAGCCGTATAATGTATCTGTTGCTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttttgttcttttgcatataacacatgtatgttaattgattatcccctagtacattatggttattgaaagttgttgtaagagtttgatataaca-
 || || | |||||||||||| |||||||| || |||||||| ||||| ||||||||| ||||||||||||  |||||||  |||||||||||| |||||||  ||   |  ||  |||   ||| |    |||    |  |||  |||  ||| | |  ||  ||       |  |     |||| | |  || || || 
CATTATAGGGTATCTTTGGAGGGCAAAGCAACCATATAATGTTTCTGTAGCTGCTGAAGTTTCTGCATGTGTGGCATTGCTGAATCCTACCTATTTAGAGgtactttggtcttttattttagtattatttttgttgcatgtttggctatatcctcgcattttgaggaccaaacatttcaacataagggataaat-tagcat

upper sequence: GLYMA16G27220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0072g00940.t01 (Vitis vinifera), 5'ss of exon 8
TATAATTGAGTATCTTTGGAGAGCAAAGCAGCCGTATAATGTATCTGTTGCTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttttgttcttttgcatataacacatgtatgttaattgattat-cccctagtacattatggttattgaaagttgttgtaagagtttgatataaca--
 || |||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||| |||||  ||||| | |||||  || |||| || | ||  |  ||  |  | | |  ||  || || |  |||| | |  |||| |      | | ||      || |  | ||  |  |  
CATTATTGAGTATCTTTGGAGAGCAAAGCAACCATATAATGTTTCTGTTGCTGCTGAAGTTTCTGCATGTGCAGCATTGCAGAATCCCGCCTATTTGGAGgtactttttttcttttatttta-gtattatttttgttgtatctggttttatcccttgcat-ttataggaccaaacatttcaaaataggggataatg-agtatc

upper sequence: GLYMA16G27220.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S175_129V6.1 (Physcomitrella patens), 5'ss of exon 8
TATAATTGAGTATCTTTGGAGAGCAAAGCAGCCGTATAATGTATCTGTTGCTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttt-----tcttttgttcttttgcatataacacatgtatgttaattgatt------atcccctagtacattatggttattgaaagttgttgtaagagtttgatataaca-----------------------------------------------------------------------
| | ||||||||  | ||| |||| |||||||| || ||||| ||||||||||||||| |  |||||||||||||  |    ||||| |  ||  | |||||  |       |   |||      ||||  |  ||  | |   | || |||       |  |  |||    |    |     | |  | |||||  |||||   |                                                                            
TCTGATTGAGTACTTGTGGCGAGCCAAGCAGCCCTACAATGTCTCTGTTGCTGCTGAAGTGGCTGCATGTGCAGCTCTTACTAATCCAAAATACTTGGAGgtaatggcgacttaaagttaaacctcataatattcaaatctagcagtttattctgatagtgtctaagtctgctgctatcggcaataagttttgtac-agtttaccacctatttagagatgtacctaaaattaataccggttgcattttctcttgtcctcaatagctcatgcttgtataacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932614|gb|BU549753.1|BU549753
EST:     GCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: GCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|209706879|gb|BW653145.1|BW653145
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|23725215|gb|BU760556.1|BU760556
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|254330365|gb|GR841630.1|GR841630
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|213602019|gb|DB981897.1|DB981897
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|192299361|gb|FG990757.1|FG990757
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTCGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG