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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAGGATGAACTAGGTGCTCTATACGATAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAAgtacacaaccctccctgatttttttgtttacagtttttgttaagcaaggggaggttggggtggtttaaaatgtttgtctcaagtccgcttctttctttttgcag

Basic information

species Glycine max
transcript GLYMA16G27060.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207714252|gb|GD695815.1|GD695815
EST:     TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAA                         AAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAAGAGAAG
genomic: TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAAgtacacaacc ... ctttttgcagAAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAAGAGAAG
EST: gi|27424892|gb|CA936412.1|CA936412
EST:     TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAA                         AAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAACACAAG
genomic: TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAAgtacacaacc ... ctttttgcagAAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAAGAGAAG
EST: gi|298192732|gb|HO033166.1|HO033166
EST:     TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAA                         AAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAAGAGAAG
genomic: TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAAgtacacaacc ... ctttttgcagAAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAAGAGAAG
EST: gi|5770839|gb|AI974013.1|AI974013
EST:     TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAA                         AAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAAGAGAAG
genomic: TAGATACAGAGTTGGATATGCCACAGCCGATGCTATTATTTCAGTTCAAAgtacacaacc ... ctttttgcagAAGTAGCATCTCGGTTGGGTTGTGATAACTTAGATGAAATTACAAGAGAAG