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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAGgtttgagttgtttactcattagtagttgtattctattttataccattaactttcattcaaatggagttaatttgtttttattctctatttttcatgattttcag

Basic information

species Glycine max
transcript GLYMA16G27050.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27050.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0032g00440.t01 (Vitis vinifera), 5'ss of exon 8
ACCCTGAGAGAGGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAGgtttgagttgtttactcat---tagtagttgtattctattttataccattaactttcattcaaatggagttaatttgtttttattctctatt---tttcatgattttcag
  ||| |||||  ||||||||||||| ||||| |||||||| || || || |||||||||||||||| |  || |||  |   || ||  |  |||   |   ||   || ||||   |||   |||     ||  || ||||||  | | ||   |||  |||||  |||
GTCCTAAGAGAATCCATCCATCAAGAATATCGGGAGGTGGTGGAAAGGCGTGTTTTTACAGgtttgaatccttcacttgtgcataataactacatttcctacaatttgatcaactga-attttcatgacacaaagatgattttatgttttgttggtttttgtgattgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315172|gb|GR830165.1|GR830165
EST:     GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAG                         TTACGGGCACAAGAGCTGATGAGGAG
genomic: GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAGgtttgagttg ... tgattttcagTTACGGGCACAAGAGCTGATGAGGAG
EST: gi|192324538|gb|FK016789.1|FK016789
EST:     GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAG                         TTACGGGCACAAGAGCTGATGAGGAG
genomic: GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAGgtttgagttg ... tgattttcagTTACGGGCACAAGAGCTGATGAGGAG
EST: gi|192294341|gb|FG987270.1|FG987270
EST:     GCCATCCATCAAGAGTATCGCGAGGTGGTTGAAGAGACGCGTTTTTACAG                         TTACGGGCACAAGAGCTGATGAGGAG
genomic: GCCATCCATCAAGAGTATCGCGAGGTGGTTGA-GAGACGCGTTTTTACAGgtttgagttg ... tgattttcagTTACGGGCACAAGAGCTGATGAGGAG