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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttgcatatttaactttttcagtacatacagatgtaatttcaacgattttgtatagtcatcataatcataaaagcattacatttaga...

Basic information

species Glycine max
transcript GLYMA16G25450.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G149238_T02 (Zea mays), 5'ss of exon 9
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttgcatatttaactttttcagtacataca-gatgtaatttcaacgattttgtatagtcatcataatcataaaagcattacatttaga
|||||||| ||||| ||||||||||| |||||||| ||||| |||||  | |||||  | |||   || |||||||||| |||| | |||    || |  |  |   ||| | | || ||    |  |  |   | |||    |||   | |||  ||       |   |  || 
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGgtatgtagttcttttttatcatgtttcaatcatagtgcgtgcatgactccagctacattctcttgctctgtcgataaaatgctatggtggatggctgcag-

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 9
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttg-catatttaactttttcagtacatacagatgtaatttcaacgattttgtatag-tcatcataatcataaaagcattacatttaga
|||||||| ||||| ||||||||||| |||||||| ||||| || ||  | ||||| || ||||  || |||||||||| ||||   |||  |||  || |    |  ||| ||| ||    |  || ||||| ||  |  ||  |  |  |  | ||||||   |          
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccat--agtgcatgcatgactc-ttgcaacggttgagattatcttgttctgttgataaaatggtag--------

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G161418_T01 (Zea mays), 5'ss of exon 1
--------------------------GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttg-catatttaactttttcagtacatacagatgtaatttcaacgattttgtatag-tcatcataatcataaaagcattacatttaga-
                          |||||||| ||||| ||||||||||| |||||||| ||||| || ||  | ||||| || ||||  || |||||||||| ||||   |||  |||  || |    |  ||| ||| ||    |  || ||||| ||  |  ||  |  |  |  | ||||||   |    |  |   
TTCATTTCATACTCCATTGTTTGTAGGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccat--agtgcatgcatgactc-ttgcaacggttgagattatcttgttctgttgataaaatggtagggtggatgg

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 7
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttg-catatttaactttttcagtacatacagatgtaatttcaacgattttgtatag-tcatcataatcataaaagcattacatttaga-
|||||||| ||||| ||||||||||| |||||||| ||||| || ||  | ||||| || ||||  || |||||||||| ||||   |||  |||  || |    |  ||| ||| ||    |  || ||||| ||  |  ||  |  |  |  | ||||||   |    |  |   
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATGgtatgtagttccttttatcatgcttcaaccat--agtgcatgcatgactc-ttgcaacggttgagattatcttgttctgttgataaaatggtagggtggatgg

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 9
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatga--agttgtctttgcat-atttaactttttcagtacatacagatgtaat-ttcaacgattttgtatagtcatcataatcataaaagcattacatttaga---------------------------------
|||||||||||||| || || || ||||| |||||||| || || |||||||||||| |||| ||||||||||||||||   | |||| |||  || ||   ||||      |       ||||   | ||  |  | |  |||     ||  | |    || |     | |||  ||                                 
GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATGgtatgtttacttgttttttgattatgctacttgaatgtttttccatgatgctctgtttgattaatccgtaggaatatt-tgagggcaagaaatggaaattctgaatcttattgagggtgtttgggttggtatggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207777564|gb|GD746643.1|GD746643
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         AATTGTAATTCAAG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagA-TTGTAATTCAAG
EST: gi|208062592|gb|GD860697.1|GD860697
EST:     TTGAAAACATATATCCCGTGCTTACTGAGTTCAAGGAAAAACCAACAATG                         ATTGTAATTCAA
genomic: TTGAAAACATATATCCCGTGCTTACTGAGTTCA-GGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAA
EST: gi|208281131|gb|GE079733.1|GE079733
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
EST: gi|193614819|gb|FK562829.1|FK562829
EST:     TGAAAACATATATCCCGTGCTTACTGAGTTCAAGGAAAAAACCAACAATG                         ATTGTAATTCAA
genomic: TGAAAACATATATCCCGTGCTTACTGAGTTCA-GGAAAAA-CCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAA
EST: gi|193570275|gb|FK526228.1|FK526228
EST:     TTGAAAACATATATCCCGTGCTTACTGAGTTCAAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCA
genomic: TTGAAAACATATATCCCGTGCTTACTGAGTTCA-GGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCA
EST: gi|193394019|gb|FK358556.1|FK358556
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGG
EST: gi|193656727|gb|FK603759.1|FK603759
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCG
EST: gi|208332947|gb|GE130360.1|GE130360
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCG
EST: gi|208249868|gb|GE048711.1|GE048711
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAG
EST: gi|254320724|gb|GR827173.1|GR827173
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
EST: gi|207684739|gb|GD666714.1|GD666714
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGT
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGT
EST: gi|193717026|gb|FK649894.1|FK649894
EST:     TTTG-AAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
EST: gi|193650388|gb|FK598115.1|FK598115
EST:     TTTGAAAACATATATCCCGTGCTTACCGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGT
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGT
EST: gi|193705794|gb|FK643604.1|FK643604
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTTAATTCAAGAAAGAGCAGGAGCAGTTGGTTTGGCAG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGT-AATTCAAGAAAGAGCAGGAGCAGT-GGTTTGGCAG
EST: gi|207782140|gb|GD753711.1|GD753711
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAG
EST: gi|207788728|gb|GD761644.1|GD761644
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAG
EST: gi|193494312|gb|FK462752.1|FK462752
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGC
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGC
EST: gi|193598761|gb|FK554129.1|FK554129
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
EST: gi|208332302|gb|GE126523.1|GE126523
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAA
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAA
EST: gi|208122006|gb|GD917643.1|GD917643
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCA-CAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGG
EST: gi|208074510|gb|GD868231.1|GD868231
EST:     TTTGAAAACNTATATCCCGTGCTTACTGAGTTCAGGAAAAACCA-CAATG                         ATTGTAATTCAAGAAAG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAG
EST: gi|193449544|gb|FK416467.1|FK416467
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
EST: gi|193570425|gb|FK525370.1|FK525370
EST:     TGAAAACATATATCCCGTGCTTACTGAGTTCAAGGAAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAG
genomic: TGAAAACATATATCCCGTGCTTACTGAGTTCA-GGAAAAA-CCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAG
EST: gi|193706474|gb|FK646714.1|FK646714
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAAGAAAGAGCA
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAA-GAAAGAGCA
EST: gi|208111655|gb|GD911921.1|GD911921
EST:     TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAA
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAA
EST: gi|193497917|gb|FK458713.1|FK458713
EST:     TTTGAAAACATATATCCCGTGCTTACCGAGTTCAGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
genomic: TTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
EST: gi|208031541|gb|GD830377.1|GD830377
EST:     AGGAAAAACCAACAATG                         ATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG
genomic: AGGAAAAACCAACAATGgtatgaagtt ... atgatggcagATTGTAATTCAAGAAAGAGCAGGAGCAGTGGTTTGGCAGAGAAGTTCGTGG