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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATGgtacattctcaaactagctgcaaattctaagttcttcggcacctacacttgccattaatttatagcatctgctaatatgaaccag

Basic information

species Glycine max
transcript GLYMA16G25390.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25390.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g01780.t01 (Vitis vinifera), 5'ss of exon 9
GTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATGgtacattctcaaactagctgcaaattctaagttcttcg-gcacctacacttgccattaatttatagcatctgctaatatgaaccag---------------------------------------------------
||     |||||||||| ||    |||||||||||| |||||||||| |||||||| || || || |||||||||||| |   |  ||  | ||        | | |       |||   | |  |   ||||    | || | |   | || |   | |                                                    
GTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGgtaaaccttagaagaaccttttttggttgactgggagaagcatggataaatattattatacca-agaaaccaatgatcttctcaaactattgtatttggattttgattttgatcattgttatgatttcctgatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398508|gb|EV268379.1|EV268379
EST:     TGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATG                         GAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAG
genomic: TGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATGgtacattctc ... tatgaaccagGAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAG