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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaactaagttatcagtttattagtagtgctgtgaatgatgttagtattgctgtgacttgcatcag

Basic information

species Glycine max
transcript GLYMA16G24310.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaactaagtta--tcagtttattagtagtgctgt--gaat-gatgttagtattgctgtga-cttgcatcag
|||  |  |||| ||||| ||| ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||    |   ||||||         |  ||| | || |    |  || ||  || |||| |  |||| |||  ||  ||||   ||| ||||   |||
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag

upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaactaagttatcagtttattagtagtgctgtgaatgatgttagtattg-ctgtgacttgcatcag
|||  | ||||| ||||||||||||||||| ||    |||||||| || ||||| |||||||||||||||||||||||||||   |  ||        |||| |    | | | |   | | |  | | ||  || |  |||  ||||||  | ||| || |  |||
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctactaa----ataacatgttgatgtaaaaatgtcaa-attactaagattattgt-ggtattgattatgattt-ctccag

upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttaggg-tgcttataaaactaagttatcagtttattagtagtgct-gtgaatgatgttagtattgctgtgacttgcatcag
||||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||| |   | |  | ||||  |     | | | || | | |  | | |    | ||   |||| ||   ||| | |||| ||||  |||
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag

upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S395_50V6.1 (Physcomitrella patens), 5'ss of exon 9
GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttagggtgcttataaaactaagttatcagtttattagtagtgctgtgaatgatgtta-gtattgctgtg-acttgcatcag-------
 |||||  |||  |||||| |  || || | || || || ||| | |||||||||||||||||||||||||||   ||       ||     ||   ||| |   ||||  | || | | |  ||  || | ||||| |   |    ||      | || |||   ||       
ATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtg--tgccacgctttcccttgttgatatgatgttaaggcaacaatcttt--gttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016941|gb|CX703683.1|CX703683
EST:     CAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA                         GACTTGCGATGGAGCTGATGAAACGAGGGGCAATGATGACTGTTTTGAGCT
genomic: CAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtt ... cttgcatcagGACTTGCGATGGAGCTGATGAAACGAGGGGCAATGATGACTGTTTTGAGCT
EST: gi|58016695|gb|CX703437.1|CX703437
EST:     CAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA                         GACTTGCGATGGAGCTGATGAAACGAGGGGCAATGATGACTGTTTTGAGCT
genomic: CAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtt ... cttgcatcagGACTTGCGATGGAGCTGATGAAACGAGGGGCAATGATGACTGTTTTGAGCT