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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTGGGAGCACTAAAACTTACTGGATTTCTTAGAGAACAAATGCAACAAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGgtattgttattgtcctttctgttctgaaatagttattttgattgatgggattttacttatatttgatgctgcagtgctcttgagaagatagaagtggacc...

Basic information

species Glycine max
transcript GLYMA16G19540.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19540.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0015g01740.t01 (Vitis vinifera), 5'ss of exon 8
GGGGCTGGGAGCACTAAAACTTACTGGATTTCTTAGAGAACAAATGCAACAAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGgtattgttattgtcctttctgttctgaaatagttattttgattgatgggattttacttatatttgatgctgcagtgctcttgagaagatagaagtggacc--
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GGGAATGGGAGGATTGAAACTCACTGGATTTCTCAGGGAGCGGATGCAGCAGCAAAATATGAACTTTGAGTCACTTTACACTGTTCGCTCACTGAAAGAGgtattcataccgtccctttgagtgt-atattgttactgttctttcttttgcttctctttgataggaaactcatgtagtggc-ataagatgtgattttacatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318482|gb|GR832650.1|GR832650
EST:     AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAG                         AAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACT
genomic: AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGgtattgttat ... atggcaacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACT
EST: gi|9204527|gb|BE330751.1|BE330751
EST:     AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAG                         AAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACT
genomic: AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGgtattgttat ... atggcaacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACT