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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataacttctctccacttaacttcccatatgattgtattttagttagataaaaccaataaatcttgattaaggaattcacaaatctttgattcctggg...

Basic information

species Glycine max
transcript GLYMA16G17580.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 11
ATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt---ctctccacttaacttc--ccatatgattgtattttagttagataaaaccaataaatcttgattaaggaattcacaaatctttgattcctggg
||||||||||||||||||| ||||||||||||||||| || || | |||||| || |||||  | ||||||||   |   || | ||     ||    |       |   |  |  |||    ||      |    |||  ||   |        ||| |||||        
ATATGTGGGCAATGGGTGCCATAATGGCTGAGTTGTTGACACTCCATCCTCTCTTTCCTGGAACTAGgtaatatggttgactgtgcatgctgctaaagcttggcactcacaaatctgttgctcaatttgtttgctgctttcttgttgttcaacttaatatttgacct-----

upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 12
ATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaata------acttctctccacttaa-cttcccatatgattgtattttagttagataaaaccaataaatcttgattaaggaattcacaaatctttgattcctggg
||||||||||||||||||| |||||||||||| |||| || || | |||||| || |||||  ||||||||||      |||  |  |   | || |||  ||        | ||||  |    |        | |  ||| |     || ||  |  |  ||| ||       
ATATGTGGGCAATGGGTGCCATAATGGCTGAGCTGTTGACACTCCATCCTCTCTTTCCTGGAACCAGgtaatatggttgactgtttgctggtaaagcttgtcactcacaaatcttttgctgctttcttgttggtca-ccttaaagtttgacttatctcaaatttaatg------

upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 8
ATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataacttctctccacttaacttcccatatgattgtattttagtta-gataaaaccaataaatcttgattaaggaattcacaaatctttgattcctggg
|||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || || || || ||||||    || | ||| |||  ||||  |  |  | || |||   ||  | |   || | | |   |  ||   | |  |    ||| ||  ||   ||  
ATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAGgtaaatgtttttttcccctttccttct-aggtattggtttttcccttttgcttttactagttatggtgtatgttgcacgtggttaattttacataattgaa

upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ11811 (Selaginella moellendorffii), 5'ss of exon 6
---------------------------------ATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataacttctctccacttaacttcccatatgattgtattttagttagataaaaccaataaatcttgattaaggaattcacaaatctttgattcctggg
                                 | |||||||||||||||||||| ||||||||| | |||| |||  | ||| | || |||||  | |||||||     |  || | |  ||  |     | |   | ||||    |  |     ||                                          
TACTGCAGTCGTCTCTGTACAACTCTGCGGTCGACATGTGGGCAATGGGTGCTATCATGGCTGAGCTTTTCAATCTCAGGCCTATCTTTCCTGGCGCTAGgtaatt-tcgcagtctattggacgccatcgcttaccatttttttaccatctgtg--cag-----------------------------------------

upper sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ22662 (Selaginella moellendorffii), 5'ss of exon 6
---------------------------------ATATGTGGGCAATGGGTGCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataacttctctccacttaacttcccatatgattgtattttagttagataaaaccaataaatcttgattaaggaattcacaaatctttgattcctggg
                                 | |||||||||||||||||||| ||||||||| | |||| |||  | ||| | || |||||  | |||||||     |  || | |  ||        | |   | ||||    |  |     ||                                          
TACTGCAGTCGTCTCTGTACAACTCTGCGGTCGACATGTGGGCAATGGGTGCTATCATGGCTGAGCTTTTCAATCTCAGGCCTATCTTTCCTGGCGCTAGgtaatt-tcgcagtctattggacgctatcgcttaccatttttttaccatctgtg--cag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208167092|gb|GD962994.1|GD962994
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|193718080|gb|FK653378.1|FK653378
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGG
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGG
EST: gi|193495067|gb|FK460199.1|FK460199
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|208299186|gb|GE100085.1|GE100085
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|193599933|gb|FK550734.1|FK550734
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|208169630|gb|GD967787.1|GD967787
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATACGCAGTGTGATAGGTAGTCCAACCAC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|193345679|gb|FK313762.1|FK313762
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTAACAAAA
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTA-CAAAA
EST: gi|193423617|gb|FK387282.1|FK387282
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCA
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCA
EST: gi|207727178|gb|GD701128.1|GD701128
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCTC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|193377218|gb|FK341889.1|FK341889
EST:     TTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
genomic: TTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|193651862|gb|FK595565.1|FK595565
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCATCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|12690052|gb|BG156388.1|BG156388
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAATATGCAGTGTGATAGGTAGTCCAACCAC
EST: gi|193411420|gb|FK381551.1|FK381551
EST:     GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAG                         TGAAGCAGATGAGATCTACAAAAT
genomic: GCTATAATGGCTGAGTTGTTCACTCTGCGTCCTCTATTCCCTGGTTCCAGgtaataactt ... gtacatgcagTGAAGCAGATGAGATCTACAAAAT