1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcctttaacagtcaatgcatttggatgataaagtcctttcttgtgagtctatctattgattttactatagcaatataataaatttattttaattcttggcag
species | Glycine max |
transcript | GLYMA16G10880.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|26269443|gb|CA820506.1|CA820506
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|23064172|gb|BU578945.1|BU578945
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|22522877|gb|BU081688.1|BU081688
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|209701660|gb|BW655881.1|BW655881
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTT-GGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTG-TTGGAGCAAGCTATGACGATEST: gi|120494409|gb|EH222576.1|EH222576
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|209719035|gb|BW657927.1|BW657927
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTG-TTGGAGCAAGCTATGACGATEST: gi|120497234|gb|EH225401.1|EH225401
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATATG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACAATEST: gi|209729823|gb|BW658628.1|BW658628
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTG-TTGGAGCAAGCTATGACGATEST: gi|17962913|gb|BM269669.1|BM269669
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|14205385|gb|BG839063.1|BG839063
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTT-GGGYGAAAAATAACTATTGACTCTGCT-CCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|10844582|gb|BF067838.1|BF067838
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTAGTT-GGAGCAAGCTATGACGAEST: gi|209722139|gb|BW659330.1|BW659330
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTT-GTTTGGAGCAAGCTATGACGA
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|10844694|gb|BF070942.1|BF070942
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTGTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTATAAGTAATTGAAGCACATTACTTGATTGGAGCAAGCTATGAEST: gi|15288120|gb|BI472011.1|BI472011
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGA
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|9204784|gb|BE331008.1|BE331008
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|22523177|gb|BU081988.1|BU081988
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|27424376|gb|CA935896.1|CA935896
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|120493876|gb|EH222043.1|EH222043
genomic: GAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAAAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|8670132|gb|BE191239.1|BE191239
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|9258778|gb|BE346925.1|BE346925
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|209728985|gb|BW651748.1|BW651748
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|9205477|gb|BE331701.1|BE331701
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGAAAAATAACTATTGACTCTGCTACCCTTTGCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|20811436|gb|BQ295914.1|BQ295914
genomic: GGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATEST: gi|9205303|gb|BE331527.1|BE331527
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGGTCTAGAAAAGTAATTGAAGCACATTACEST: gi|8670124|gb|BE191231.1|BE191231
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGG-TCTAGAA--GTAATTGAAGCACATTAC
EST: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcctttaacagtcaatgcatttggatgataaagtcctttcttgtgagtctatctattgattttactatagcaatataataaatttattttaattcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA