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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcctttaacagtcaatgcatttggatgataaagtcctttcttgtgagtctatctattgattttactatagcaatataataaatttattttaattcttggcag

Basic information

species Glycine max
transcript GLYMA16G10880.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269443|gb|CA820506.1|CA820506
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|23064172|gb|BU578945.1|BU578945
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|22522877|gb|BU081688.1|BU081688
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|9258778|gb|BE346925.1|BE346925
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|120497234|gb|EH225401.1|EH225401
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATATG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACAAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|17962913|gb|BM269669.1|BM269669
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|10844582|gb|BF067838.1|BF067838
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTAGTT-GGAGCAAGCTATGACGA
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTT-GTTTGGAGCAAGCTATGACGA
EST: gi|10844694|gb|BF070942.1|BF070942
EST:     GGAGTGTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTATAAGTAATTGAAGCACATTACTTGATTGGAGCAAGCTATGA
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGA
EST: gi|15288120|gb|BI472011.1|BI472011
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|9204784|gb|BE331008.1|BE331008
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|22523177|gb|BU081988.1|BU081988
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|8670132|gb|BE191239.1|BE191239
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|20811436|gb|BQ295914.1|BQ295914
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|9205303|gb|BE331527.1|BE331527
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGGTCTAGAAAAGTAATTGAAGCACATTAC
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGG-TCTAGAA--GTAATTGAAGCACATTAC
EST: gi|8670124|gb|BE191231.1|BE191231
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcctttaacagtcaatgcatttggatgataaagtcctttcttgtgagtctatctattgattttactatagcaatataataaatttattttaattcttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA