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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatctgttctttgataactattttattgaatgctttttggtatatgagctcaatacgatgggagcaactggatacttagttactttctagaatagatttatccgcattcttttgaactaccttttatgacag

Basic information

species Glycine max
transcript GLYMA16G05340.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 8
ACAATGAGGTACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatctgttctttgataactattttattgaatgctttttggtatatgagctcaatacgatgggagcaactggatacttagttactttctagaatagatttatccgcattcttttgaactaccttttatgacag
|  ||||||||||||| ||||||||| |||| ||||||||  |||||||| | ||||||||||   |   | ||   | ||| |   |||   ||| | |||   | ||      |||    |  | | ||   ||   || |||| |||  ||  | |   ||                                
ATGATGAGGTACTCATCATCAAAAGTGTGACCCATAGAGATTTCAATGCAATGATAAAGgtgagtttgcat-ctcaaacaaccaaactat---atgttattttccaaatagat--aat----taagtgaaaaatgaggtttggttagttttgaggttggccataataat---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193342136|gb|FK307656.1|FK307656
EST:     TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG                         ACTATAACCCAATCCAGTCTATCTCTTC-AAGGAATTGTACTACGTCGAGG
genomic: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATA-CCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGG
EST: gi|193600295|gb|FK551176.1|FK551176
EST:     TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG                         ACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
genomic: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
EST: gi|208296452|gb|GE089664.1|GE089664
EST:     CTCAATAATACAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG                         ACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
genomic: CTC-ATAAT-CAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
EST: gi|298181752|gb|HO025927.1|HO025927
EST:     TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG                         ACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
genomic: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT