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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCATAGATATACCAAGAgtgagtgttttctttttacagctcagtttgtgtaagaggataactaaaatgtttggtgtataggataatctcattgtattgcaggatatataggttattt...

Basic information

species Glycine max
transcript GLYMA16G03970.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0056g01250.t01 (Vitis vinifera), 5'ss of exon 9
GCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCATAGATATACCAAGAgtgagtgttttctttttacagctcagtttgtgtaagaggataactaaaatgtttggtgtataggataatctcattgtattgcaggatatataggttattt---
|| || || |||||||||||| || || |||| |||| |||||| || || |||||||| |||||||| || || |||||||||||||||| | |     || ||  | | || |   ||        | | |    | || ||| || | ||   |  | | |    |  ||      |||  || ||   | || ||    
GCTGTATTTTTGCAGCTTTGTAAACTGCTAAGTCTTGAAGAGCATCCCATCGTTCAAAAACCTGTTGACCCTAGCCTTTTTATTCATAGATTTGCGGCTGgtaagcatctgctat---cactctgaacttttttgatgtattacttaattattgcattgagatgtggttgacacatgtctgcctgaaatgctgattcttatgc

upper sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ17728 (Selaginella moellendorffii), 5'ss of exon 6
GCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCATAGATATACCAAGAgtgagtgttttctttttacagctcagtttgtgtaagaggataactaaaatgtttggtgtataggataatctcattgtattgcaggatatataggttattt
||||||||  | || || |||    | || ||  | |   |||| ||||| |||||||||||||| ||||||||||| ||||| ||| | |  ||  |  |||||| || | || ||    ||   |     |  || | ||      |     |  |                                          
GCAGTTTTTCTCCAACTATGTACCCTATTGAGATTAGATCAGCATCCAATGGTTCAAAAGCCTGTGGATCCAAGTCTGTTTATCCATCGTTTCACGGACCgtgagtattgttttctt-tgtcttgatgctcatctgatgttactcttcaaaaccgcag------------------------------------------

upper sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ16257 (Selaginella moellendorffii), 5'ss of exon 5
GCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCATAGATATACCAAGAgtgagtgttttctttttacagctcagtttgtgtaagaggataactaaaatgtttggtgtataggataatctcattgtattgcaggatatataggttattt
||||||||  | || || |||    |  | ||  | |   |||| ||||| |||||||||||||| ||||||||||| ||||| ||| | |  ||  |  |||||| || | || ||    ||   |     |  || | ||      |     |  |                                          
GCAGTTTTTCTCCAACTATGTACCCTACTGAGATTAGATCAGCATCCAATGGTTCAAAAGCCTGTGGATCCAAGTCTGTTTATCCATCGTTTCACGGACCgtgagtattgttttctt-tgtcttgatgctcatctgatgttactcttcaaaaccgcag------------------------------------------