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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatttgatttccggcaaattgatttgtac...

Basic information

species Glycine max
transcript GLYMA16G03170.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 8
CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgta----aagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatttgatttccggcaaattgatttgtac
||||||| || || ||||||||||||||||| |||||||||||||||||||||||| |  |    |||||    ||| ||   |||  |   |||||||||||    ||  ||  |  ||| ||   || |||   |  |||  |||  |      |||  ||||  |   |||    ||  | || |                
CTGATGGCATGGAAGCACTGTACAAGAAGGTCCATGCTGCCATCCGTGCTGATCCTACCATGGCCAAATCAACCAAGAAGGAACCGGCGACCCACAAGAGgtacatgaatctggctgatgattt---ctggaaagatt-atttgtgatgtccatgtatgattgtaactaacttgcatctttgtctcag----------------

upper sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 8
CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgta----aagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatttgatttccggcaaattgatttgtac
||||||| || ||  |||||||||||||||| |||||||||||||| || |||||| |  |    |||||    ||| ||   |||      |||||||||||    ||| ||  |  ||| ||     |  ||     |||  |||  |      ||| |||||  |   ||| ||| |  ||| | |||             
CTGATGGCATGGAATCACTGTACAAGAAGGTCCATGCTGCCATCCGCGCCGATCCTACCATGGCCAAATCGACCAAGAAGGAACCGGCTACCCACAAGAGgtatattaagctggctgatgattttcgtaaagatt----atttgtgatgtccatgtatg-atgtaactaacttgccatctc-tttgctgcag------------

upper sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G815894_T03 (Zea mays), 5'ss of exon 8
CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatttgatttccggcaaattgatttgtac
||||||  || || || |||||||||||||| ||||||||||||||||||||||||||| |    || ||    |||||||| || ||||| ||||||||||| ||| |     || |||    |   ||||||   ||   | | |   || | | ||    | |    | | ||   ||| |    ||| |       
CTGATGACATGGAAGCTCTGTACAAGAAGGTCCATGCTGCCATCCGTGCTGATCCTTCTGTGGTCAAGTCAACCAAGCAGCCACCAAAGGAGCACAAGAGgtatagtag-ccgctgtctttttttt--atactatggtcaccata-atcctattatttgc---tctgccctgacttcccttctgctctattcag------

upper sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G163081_T04 (Zea mays), 5'ss of exon 8
CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatttgatttccggcaaattgatttgtac
||||||  || || || |||||||||||||| ||||||||||||||||| ||||||||  |    || ||    |||||||| || ||||| || |||||||| ||| | |  ||   || |  || | |  | |    | || |||    |||   | |   | |    | |  ||  ||| |     || |       
CTGATGAAATAGAAGCGCTGTACAAGAAGGTCCATGCTGCCATCCGTGCCGATCCTTCCATTGTTAAGTCAACCAAGCAGCCACCAAAGGAGCATAAGAGgtatagtagctactt---tttatatatagt-ttgg----tcgacataatccaat-cgtttgc-tctgccctgacctgccttctgcgtgtttcag------

upper sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G090738_T01 (Zea mays), 5'ss of exon 8
CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatt------tgatttccggcaaattgatttgtac-----------------
| ||||  || || || |||||||||||||| ||||| ||||||||||||||||||    |    || ||    |||  ||  || ||||| ||||||||||| |    |  |      ||    |  || ||| ||  || |  |  |    ||| ||   | |   | |  ||      | |||| |     | |||    | |                 
CCGATGACATGGAAGCTCTGTACAAGAAGGTCCATGCGGCCATCCGTGCTGATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAGgtataccctacatcg---ctggctcatgattctatatagttcacgtctgaatgtgtctgaccactcactctagttccataataattttcttagcactgagccatgcacatccgtttatttaag

upper sequence: GLYMA16G03170.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 5'ss of exon 8
CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatttgatttccggcaaattgatttgtac---
| ||||  |||||||   |||||||||||||||||||||||||||||||  | ||   ||  |||||   |||||||||||| ||||| || |||||||||| | | |||  ||  | ||||       | |||     |||  ||    ||   ||| |||  | |  ||  ||| ||| ||      ||   || | |   
CAGATGACATTGAGGAGATGTACAAGAAGGTTCATGCTGCCATCCGTGCAAACCCAATTCAAAAGAAGGTTGAGAAGCAGCCACCGAAAGAGCACAAGAGgtgaggctgagatt-aaattgattcttttttctattcggttggcatttattatgctat-tat-ctgtaggttgtttaattaccatttgtttttattcttctat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193667735|gb|FK613039.1|FK613039
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207785032|gb|GD756109.1|GD756109
EST:     CCCCGAAGGAACACAAGAG                         GTACGATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: CCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|27423943|gb|CA935463.1|CA935463
EST:     CCCCCGAAGGAACACCAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: CCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193663941|gb|FK614221.1|FK614221
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|7232524|gb|AW567879.1|AW567879
EST:     AGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: AGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|15661567|gb|BI698938.1|BI698938
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|192308476|gb|FK001378.1|FK001378
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193679016|gb|FK615428.1|FK615428
EST:     TCCTTTCTTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: TCC-TTC-TCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208059629|gb|GD858359.1|GD858359
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAACCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|6848438|gb|AW350728.1|AW350728
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207764778|gb|GD738481.1|GD738481
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|8404068|gb|BE059702.1|BE059702
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207779713|gb|GD752545.1|GD752545
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTTGTTAT
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTT-G--AT
EST: gi|21676868|gb|BQ629219.1|BQ629219
EST:     GAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208078854|gb|GD878878.1|GD878878
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193586240|gb|FK543418.1|FK543418
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208329911|gb|GE129728.1|GE129728
EST:     TCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: TCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207835097|gb|GD809126.1|GD809126
EST:     CCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: CCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|13562959|gb|BG551179.1|BG551179
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|6846732|gb|AW349022.1|AW349022
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|4300820|gb|AI443102.1|AI443102
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|208178615|gb|GD977518.1|GD977518
EST:     CCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: CCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|31461703|gb|CD403731.1|CD403731
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACCATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|15812479|gb|BI784754.1|BI784754
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGACGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193472613|gb|FK435768.1|FK435768
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|207761818|gb|GD732467.1|GD732467
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAA
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAA
EST: gi|13790762|gb|BG653353.1|BG653353
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193479067|gb|FK448052.1|FK448052
EST:     TCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: TCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|17021154|gb|BM092188.1|BM092188
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|7590637|gb|AW706385.1|AW706385
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|193442599|gb|FK409712.1|FK409712
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGTG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
EST: gi|209701099|gb|BW664201.1|BW664201
EST:     GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAG                         GTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC
genomic: GATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttga ... ctttctgcagGTACAATCTGAAGAAACTCACTTATGAGGAGAGGAAGGCTAAGTTGATTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGATGGTATTGAGGCACTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTTCTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAACACAAGAGgtaaagttgatttttgacttgaactagaatactagattcttgaaatagggtaatgtatgtatattttttgtcatttgatttccggcaaattgatttgtac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA